TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...   162   1e-66

>gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.24, whole
              genome shotgun sequence
          Length = 471063

 Score =  162 bits (409), Expect(5) = 1e-66
 Identities = 92/192 (47%), Positives = 114/192 (59%), Gaps = 35/192 (18%)
 Frame = +3

Query: 100    GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSV 159
              GRIACANVLSDLYAMGVTE D MLM+LGVS  MTD ERD V   +I GF D A EAGT+V
Sbjct: 142827 GRIACANVLSDLYAMGVTEVDTMLMILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNV 143006

Query: 160    TGGQTVLNPWIVLGGVA-----------------TTVCQPNEFIMPDNAVPGDVLVLTKP 202
              TGGQTV+NPW ++GGVA                 T +   +E I P+NA  G +LVLTKP
Sbjct: 143007 TGGQTVMNPWPIVGGVAMSVRAGSPMFSSTKRNLTNIHLESEIIRPENATAGQMLVLTKP 143186

Query: 203    LG------------------TQVAVAVHQWLDIPEKWNKIKLVVTQEDVELVYQEAMMNM 244
              LG                  TQ+AV  +Q  D P +W+K++  +T+E  +  +  A  +M
Sbjct: 143187 LGCALVLGGEFIASCCHAHSTQLAVNAYQMKDQPARWSKVESFLTREMADRAFSVASESM 143366

Query: 245    ARLNRTAAGLMH 256
              +RLN   A LMH
Sbjct: 143367 SRLNVNGAKLMH 143402



 Score = 66.6 bits (161), Expect(5) = 1e-66
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 23/106 (21%)
 Frame = +2

Query: 251    AAGLMHTFNA----HAATDITGFGILGHAQ-------------------NLAKQQRNEVS 287
              ++G MHT +A     +ATD+TGFGILGHAQ                   N+A  Q+ +V 
Sbjct: 143423 SSGNMHTDHA*HGVTSATDVTGFGILGHAQYGNTIGV*LLLTLAFAAARNMATSQKADVD 143602

Query: 288    FVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQA 333
              F +H LPV+  M AV++A    + L  G   ETSGGLL+ +  ++A
Sbjct: 143603 FELHTLPVIKDMLAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA 143740



 Score = 41.6 bits (96), Expect(5) = 1e-66
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 4      RESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL 45
              R  FNP  + L + FRLT F+ LKG GCK+PQ+ L   +  +
Sbjct: 142474 RAPFNPTDHGLREDFRLTDFSALKG*GCKLPQEKLLSYISGI 142599



 Score = 40.4 bits (93), Expect(5) = 1e-66
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = +2

Query: 67     GMDTCVIPLRH---GGLSLVQTTDYIYPIVDDPYM 98
              GMD+ V+ ++H   G L ++ TTD+ YP+V DPY+
Sbjct: 142676 GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYV 142780



 Score = 24.3 bits (51), Expect(5) = 1e-66
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 351    AWIIGIVEKGNRTARIIDKPRIIEV 375
              AWI+G V +G + AR+      +E+
Sbjct: 143827 AWIVGRVVQGTKQARLAPDVTFVEI 143901


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,971,048
Number of Sequences: 1445
Number of extensions: 389513
Number of successful extensions: 1753
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1364
Number of HSP's gapped (non-prelim): 781
length of query: 392
length of database: 17,710,878
effective HSP length: 106
effective length of query: 286
effective length of database: 17,557,708
effective search space: 5021504488
effective search space used: 5021504488
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)