TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   172   4e-89

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  172 bits (435), Expect(3) = 4e-89
 Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
 Frame = +2

Query: 6     SFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG 65
             +F+P +  L++ F LT F+ LKG GCK+PQ  L   L+++  N           V P   
Sbjct: 12368 AFDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPND----------VKPNET 12517

Query: 66    IGMDTCVIPLRHG-GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 124
              GMD+ V+ + HG GL LV TTD+ +P V+DPY+ G+IACANVLSD+YAMGVTE D MLM
Sbjct: 12518 PGMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLM 12697

Query: 125   LLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV 179
             +LGV   MT+++RD V   +I+GF D A +A T+VTGGQTV+NPW ++GGVA +V
Sbjct: 12698 ILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSV 12862



 Score =  114 bits (284), Expect(3) = 4e-89
 Identities = 56/119 (47%), Positives = 77/119 (64%)
 Frame = +1

Query: 260   AHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPE 319
             AH+ATD+TGFG+L HA+N AK Q  +VSF +H LP++  M  V++  GN F L+ G   E
Sbjct: 13291 AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAE 13470

Query: 320   TSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 378
             TSGGLL+CLP E A  F  E++     +   AWI+G V  G + A I+  P I+EV+P+
Sbjct: 13471 TSGGLLLCLPAENAEAFIKELREL---DEKPAWIVGRVIAGLKDACIVPNPTIVEVSPE 13638



 Score = 84.0 bits (206), Expect(3) = 4e-89
 Identities = 39/73 (53%), Positives = 51/73 (69%)
 Frame = +3

Query: 184   EFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELVYQEAMMN 243
             + I P+NAV GDV++LTKPLGTQVAV V QW   PE+W ++  VVT  D ++ +Q A  +
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASES 13151

Query: 244   MARLNRTAAGLMH 256
             M RLN  AA +MH
Sbjct: 13152 MGRLNLNAAKMMH 13190


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,224,723
Number of Sequences: 5422
Number of extensions: 430934
Number of successful extensions: 1480
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 407
length of query: 392
length of database: 22,486,378
effective HSP length: 107
effective length of query: 285
effective length of database: 21,906,224
effective search space: 6243273840
effective search space used: 6243273840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)