TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                   262   3e-70

>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score =  262 bits (669), Expect = 3e-70
 Identities = 153/299 (51%), Positives = 187/299 (62%), Gaps = 38/299 (12%)
 Frame = -2

Query: 100     GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSV 159
               GRIACANVLSDLYAMGV+ECDNMLMLLGVS  +T  E   V PL+++GF D  +EAGT+V
Sbjct: 1155365 GRIACANVLSDLYAMGVSECDNMLMLLGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNV 1155186

Query: 160     TGGQTVLNPWIVLGGVATTVCQPNEFIMP----------------------------DNA 191
                GGQTV NPW +LGGVAT+V   +E IMP                            D A
Sbjct: 1155185 LGGQTVKNPWFLLGGVATSVVGRHEMIMPGTRDNRASSCIFGHALSADLL*HSLDFTDGA 1155006

Query: 192     VPGDVLVLTKPLGTQVAVAVHQW-LDIPEKWNKIKLVVTQEDVELVYQEAMMNMARLNRT 250
                 GDVLVLTKPLG Q+AV  HQW L  PE++ ++  V+T E V   Y+ A+ NM RL+R 
Sbjct: 1155005 KSGDVLVLTKPLGNQLAVNAHQWMLTDPERYKRLDGVLTNEQVIEAYEHAITNMTRLSRV 1154826

Query: 251     AAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMF 310
               AA LM  F AHAATD+TGFGILGHA+NLA+ Q++ V+F I   PVL  M A+ +A   +F
Sbjct: 1154825 AARLMREFGAHAATDVTGFGILGHARNLARSQKDSVNFEIDVFPVLRHMIAMERAT-PVF 1154649

Query: 311     GLMHGTCPETSGGLLICL---------PREQAARFCAEIKSPKYGEGHQAWIIGIVEKG 360
                L+ GT  ETSGGLLI L          R  A R+C E+   +   G QA+IIG V +G
Sbjct: 1154648 HLLEGTSAETSGGLLIALGPSPDGKLDARANAQRYCDEL--ARQDRGFQAYIIGRVVEG 1154478



 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 46/107 (42%), Positives = 56/107 (52%), Gaps = 23/107 (21%)
 Frame = -2

Query: 4       RESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQ---ENHFQEDEQFLGAV 60
               R+ FNPET  L   +RLT+FT+LKG GCKVPQ  L KLLE  +    N     EQ + A 
Sbjct: 1155971 RKRFNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNAVAGSEQQIAAP 1155792

Query: 61      MP--------------------RLGIGMDTCVIPLRHGGLSLVQTTD 87
                P                     +G+G+D+CV   RH GL LVQTTD
Sbjct: 1155791 TPTSGGAAVPASSIPAAITADGTIGVGLDSCVTETRHPGLYLVQTTD 1155651


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,111,434
Number of Sequences: 89
Number of extensions: 206146
Number of successful extensions: 873
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 328
length of query: 392
length of database: 9,347,932
effective HSP length: 101
effective length of query: 291
effective length of database: 9,338,943
effective search space: 2717632413
effective search space used: 2717632413
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)