TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...   175   3e-44

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score =  175 bits (443), Expect = 3e-44
 Identities = 123/319 (38%), Positives = 166/319 (52%), Gaps = 38/319 (11%)
 Frame = -2

Query: 18     FRLTRFTELKGTGCKVPQDVL-------QKLLESLQENHFQE---------DEQFLGAVM 61
              FRLTR++ LKG GCKVPQ  L       + LL S  ++  +          +    G V 
Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930

Query: 62     PRLGIGMDTCVIPLRHGG--------------------LSLVQTTDYIYPIVDDPYMMGR 101
                LG+GMD  V+ L                        L L+ TTD+ +P+V+DPY+MGR
Sbjct: 478929 VELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYLMGR 478750

Query: 102    IACANVLSDLYAMGV-TECDNMLMLLGVSNKMTDRE-RDKVIPLIIQGFKDAAEEAGTSV 159
              IA ANVLSD YA+G+ T    MLML+  + ++     R  V   ++ GF DA  EAGT V
Sbjct: 478749 IAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAGTQV 478570

Query: 160    TGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPE 219
              TGGQT LNPW ++GGVA  V    EF+MPD A PGD +VLTKPLGTQVA+ ++QWL   E
Sbjct: 478569 TGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWLGQME 478390

Query: 220    KWNKIKLVVTQEDVELVYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLA 279
                + + L+ + E  +   QE      R +     +  +   H A DI G G   H  + A
Sbjct: 478389 DAHYLHLLESLETTQ--QQEYGPEDTRRSVHGQFVPPSEETH-ARDIPGPG-PAHTTHDA 478222

Query: 280    KQQRNEVSFVIHNLPVLAK 298
              +  R   S ++  LP  A+
Sbjct: 478221 RLSRALSSSILEQLPPAAR 478165



 Score =  115 bits (287), Expect = 4e-26
 Identities = 71/166 (42%), Positives = 97/166 (58%), Gaps = 11/166 (6%)
 Frame = -2

Query: 221    WNKIKLVVTQEDVELVYQEAMMNMARLNRTAAGLM-HTFNAHAATDITGFGILGHAQNLA 279
              ++KI+ V+T  D+   Y  A ++MA LN  AA L+  +  AHA TDITGFGILGHAQNLA
Sbjct: 478128 YSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLA 477949

Query: 280    KQQRNEVSFVIHNLPVLAKMAAVSKAC--GNMFGLMHGTCPETSGGLLICLPREQ----- 332
              + Q+  V   I  LP++  M +  +A   G MF L+ G   ETSGGLLIC          
Sbjct: 477948 RNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTERSS 477769

Query: 333    ---AARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEV 375
                 A +FC ++ +    +   AWI+G V  G+R ARI+D  +I+EV
Sbjct: 477768 QVVARQFCEKLAT--VDDHWPAWIVGRVVPGSREARILDHVKILEV 477637


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,685,670
Number of Sequences: 20
Number of extensions: 119488
Number of successful extensions: 548
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 32
length of query: 392
length of database: 5,515,582
effective HSP length: 98
effective length of query: 294
effective length of database: 5,513,622
effective search space: 1621004868
effective search space used: 1621004868
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)