TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-t...   268   4e-72

>emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_20
          Length = 315468

 Score =  268 bits (684), Expect = 4e-72
 Identities = 146/305 (47%), Positives = 189/305 (61%), Gaps = 12/305 (3%)
 Frame = +3

Query: 83     VQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVIP 142
              + TTD+ YP VDDPY+ G+IA  NVLSD+YAMGVTE D MLM+LGVS  M     D V  
Sbjct: 201756 ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVDMEPDAMDYVTK 201935

Query: 143    LIIQGFK-----------DAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNE-FIMPDN 190
               +I+GF            D A  A T+VTGGQTV NPW ++GGVA++ C+  E FI P +
Sbjct: 201936 ELIRGFNGFPFLSSL*RVDQARVAVTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVH 202115

Query: 191    AVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELVYQEAMMNMARLNRT 250
                PGDV+VLTKPLGTQ+AV + +WL    K+N+++ V++ EDV   Y+ AM +M+ LN  
Sbjct: 202116 GEPGDVIVLTKPLGTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLE 202295

Query: 251    AAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMF 310
               A LM   +AH  TD+TGFG+ GHA NLA +Q   V  V+  LP++  MA V     N +
Sbjct: 202296 GARLMWKHHAHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMARVESHLNNNW 202475

Query: 311    GLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKP 370
               L  G   ETSGGL+I +  E A    A IK  K   GH AWIIG V +G R   +++ P
Sbjct: 202476 NLFKGRSAETSGGLMIMMRPEDAE---AYIKEYKEITGHDAWIIGKVVEGQRKGYVVENP 202646

Query: 371    RIIEV 375
               +IEV
Sbjct: 202647 TLIEV 202661


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,980,332
Number of Sequences: 54
Number of extensions: 116324
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 101
length of query: 392
length of database: 6,272,415
effective HSP length: 99
effective length of query: 293
effective length of database: 6,267,069
effective search space: 1836251217
effective search space used: 1836251217
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)