TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    79   4e-15
gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    70   2e-12
gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    61   1e-09

>gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.25,
              whole genome shotgun sequence
          Length = 436284

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
 Frame = +2

Query: 30     VSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGSNPPKRFRLNRSQAG--K 87
              VS K+I   +    AGY F+EF +   A+  + ++ G  +       R R+N +  G  +
Sbjct: 285290 VSAKIILDAETHGSAGYGFVEFETREGAQAAMPILQGRRVRAL----RIRINWAVQGSRR 285457

Query: 88     MWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYE-EGGISRGYGFVRFSDE 146
              + D     S+FVGDL  +V DD L D F   + S+  A++M++   G SR +GFV F D 
Sbjct: 285458 VADEDGLHSLFVGDLCKSVDDDMLHDAFA-HFSSLTSARVMWDVRTGTSREFGFVSFRDA 285634

Query: 147    AEQKRALQEMQGIRGLGAKPIRVSVATPK--------GKMAPSTNSSTTDTTTASIPTAY 198
              ++ +RAL+ M G   LG +PIRV+ A  K        G  A     + +  T   +PT  
Sbjct: 285635 SDAERALKTMGGTM-LGRRPIRVNRANKKTHSKNTAVGTAAVMVERAPSTGTGVKVPTGS 285811

Query: 199    DDAT 202
               D T
Sbjct: 285812 RDGT 285823



 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 38/186 (20%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
 Frame = -1

Query: 3      RSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLK 62
              R+++ G+L    DE  + +    + +   V+++  +D G   G  ++EF + A  ++ + 
Sbjct: 362814 RTIFCGNLSWNCDEDMLYETMKDIGEITDVRIVYDRDTGKHRGIGYVEFANVASVQKAID 362635

Query: 63     LVNGTTINGSN---------------PPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVT 107
               + G  ++G N                PK    N  ++ +      + ++FVG++     
Sbjct: 362634 EMTGAEVDGRNIRIDFANSNSKKFTGGPKTNAYNNDRSSRPSGPVETDTVFVGNISFDAD 362455

Query: 108    DDKLEDFFLKRYRSVKGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKP 166
              +  + + F      V+  +++ + E G  +GYG+V+FS+E+  ++A++++ G   +G + 
Sbjct: 362454 EGAIREMF-GAVGDVRDVRLITDRETGYFKGYGYVQFSEESAAQQAVEQLAGADCMG-RD 362281

Query: 167    IRVSVA 172
              +RV  A
Sbjct: 362280 LRVDFA 362263


>gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.54,
             whole genome shotgun sequence
          Length = 279941

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
 Frame = -1

Query: 2     SRSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVL 61
             S SL++GDL   + E  +   F  V    S++V R        GY ++ F + A+AER L
Sbjct: 85574 SPSLYVGDLAADISEALLFDLFNVVGAVSSIRVCRDAMTRRSLGYAYVNFHNVADAERAL 85395

Query: 62    KLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRS 121
               +N T I G  P +    +R    +   +G   +IF+ +LD  + +  L D F   + +
Sbjct: 85394 DTMNYTLIRG-KPCRIMWSHRDPTIRKSGVG---NIFIKNLDKNIDNKSLYDAF-SAFGN 85230

Query: 122   VKGAKIMYEEG-GISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAP 180
             +   K+M  E  G S GYGFV +  +     A+ ++ G+  L  K + V    P+ + A 
Sbjct: 85229 ILSCKVMINESTGESLGYGFVHYETQKAADEAIAKLNGML-LNNKQVYVGKFVPRSERAA 85053

Query: 181   STNSST-TDTTTASIPTAYDDA 201
             +      T+    +IP  +D+A
Sbjct: 85052 AQGEQRFTNVYVKNIPLDWDEA 84987



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 24/167 (14%)
 Frame = -1

Query: 30    VSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTI------NGSNPPKRFRLNRS 83
             ++  V+RR   G   G+ F+ F +   A+  +   NG  +      +G +  +   L  S
Sbjct: 84953 ITSAVVRRSAEGASLGFGFVNFETPEAAKAAVDQFNGQELPAPAAADGEDAAETQTLFVS 84774

Query: 84    QAGKMWDIGPSF------------------SIFVGDLDATVTDDKLEDFFLKRYRSVKGA 125
             +A K  +                       +++V +LD ++ DD L + F + + ++  A
Sbjct: 84773 RAQKKAEREKELKKKFEKLRQERLNKYQGINLYVKNLDDSIDDDALREAFAE-FGTISSA 84597

Query: 126   KIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVA 172
             K+M    G SRG+GFV F+ + E  RA+ EM   R LG+KPI V++A
Sbjct: 84596 KVMRTPEGASRGFGFVCFTTQEEASRAVSEMSS-RILGSKPIYVALA 84459


>gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.14,
              whole genome shotgun sequence
          Length = 557936

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 2/204 (0%)
 Frame = -2

Query: 4      SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
              +L++G L   + E  + + F Q     SV + R K     +G+ F+EF S  + E  LK+
Sbjct: 275683 TLFVGSLHDDVTEALLWELFTQAGPVSSVYMPRDKATAAHSGFGFVEFKSVLDTEYALKI 275504

Query: 64     VNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
              + G  + GS  P R     S+  K  DIG +  ++VG L   V +  L   F       +
Sbjct: 275503 MTGVRLYGS--PIRLSRGASEKSKA-DIGAN--LYVGGLSPEVDEAALGGTFSAFGALAR 275339

Query: 124    GAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK-GKMAPS 181
                 +    E G  RG+GFV F       RA+ EM G    GA+ IRV  A  K G     
Sbjct: 275338 PVNVARNPETGEPRGFGFVSFDSFEAADRAIAEMDGQFLCGAQ-IRVQYAFKKDGAPGER 275162

Query: 182    TNSSTTDTTTASIPTAYDDATAYA 205
                S       A  PT     T +A
Sbjct: 275161 HGSYAERLLAAQRPTGLQPNTMFA 275090


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,251,270
Number of Sequences: 131
Number of extensions: 118796
Number of successful extensions: 1770
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 771
length of query: 324
length of database: 9,560,209
effective HSP length: 100
effective length of query: 224
effective length of database: 9,547,109
effective search space: 2138552416
effective search space used: 2138552416
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)