TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG744218.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    70   5e-20
gb|GG743999.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    73   5e-13
gb|GG743941.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    58   1e-08
gb|GG744044.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    53   4e-07

>gb|GG744218.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.336,
            whole genome shotgun sequence
          Length = 11420

 Score = 70.5 bits (171), Expect(3) = 5e-20
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = -3

Query: 72   SNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE 131
            +N P RFRLN    GK  +     S+FVGDL   VTDD L   F  +Y SV+GAK++ ++
Sbjct: 1152 ANTPHRFRLNWGAGGKRLESMEDHSVFVGDLAGDVTDDVLFSTFSAKYASVRGAKVVLDQ 973

Query: 132  -GGISRGYGFVRFSDEAEQKRALQEMQGIR 160
               IS+G+GFVRF  +AE  +    M  +R
Sbjct: 972  MSRISKGFGFVRFGVKAEADQVHSSMHLLR 883



 Score = 39.7 bits (91), Expect(3) = 5e-20
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -1

Query: 31   SVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTI 69
            +VK+IR K  G PAGY F+EF S   A  VL  +NG  I
Sbjct: 1316 TVKLIRDKVTGYPAGYGFLEFDSPEAASEVLSTLNGQPI 1200



 Score = 26.2 bits (56), Expect(3) = 5e-20
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 3    RSLWMGDLEPYMDETFVNKAF 23
            ++LWMGD++   DE +V+  F
Sbjct: 1441 KTLWMGDVQINWDEAYVSSLF 1379


>gb|GG743999.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.117,
            whole genome shotgun sequence
          Length = 105296

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
 Frame = -2

Query: 3    RSLWMGDLEPYMDETFVNKAF----------------LQVSQPVSVKVIRRKDNGLPAGY 46
            ++LWMGD++   DE +V+  F                 Q + P S     R    +P G 
Sbjct: 7324 KTLWMGDVQINWDEAYVSSLFDAFGTMPRDYRTTLIATQATSPPSSSSATRS-RAIPPGT 7148

Query: 47   CFIEFPSEAEAERVLKLVNG-------------TTINGSNPPKRFRLNRSQAGKMWDIGP 93
                           +L                T    +N P RFRLN    GK  +   
Sbjct: 7147 ASSSLTRRTRQATSCQLSTANPFVRKPRQRRCLTACLVANTPHRFRLNWGAGGKRLESME 6968

Query: 94   SFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE-GGISRGYGFVRFSDEAEQKRA 152
             +S+FVGDL   VTDD L   F  +Y SV+GAK++ ++   IS+G+GFVRF  +AE  + 
Sbjct: 6967 DYSVFVGDLAGDVTDDVLFATFSAKYASVRGAKVVLDQMSRISKGFGFVRFGVKAEADQV 6788

Query: 153  LQEMQGIR 160
               M  +R
Sbjct: 6787 HAYMHLLR 6764


>gb|GG743941.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.59, whole
             genome shotgun sequence
          Length = 208542

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 2/204 (0%)
 Frame = -2

Query: 4     SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
             ++++G+L+  + E  + +  LQV   V+V + R K     +G+ F+EF +E +AE   K+
Sbjct: 15869 TVYVGNLDEKVTEELLWELMLQVGVVVNVHIPRDKVTSKHSGFGFVEFRTEEDAEYATKV 15690

Query: 64    VNGTTINGSNPPKRFRLNR-SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSV 122
             +N   +      K  ++ + SQ  K  DIG   ++F+G+LD  V +  L D F      +
Sbjct: 15689 MNMIQLFN----KIIKVKKASQDTKTLDIGA--NLFLGNLDPDVDEKLLYDTFSVFGGII 15528

Query: 123   KGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPS 181
             +  K+M + +   S+G+GFV +        A++ M G + L  + I V  A  KG  +  
Sbjct: 15527 ETPKVMRDVDTKQSKGFGFVAYDSFEAADLAIECMNG-QYLCNRQIVVQYAYKKGSQSER 15351

Query: 182   TNSSTTDTTTASIPTAYDDATAYA 205
               S       ++ P+     T +A
Sbjct: 15350 HGSQAERLLASNNPSKIKPHTRFA 15279


>gb|GG744044.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.162,
            whole genome shotgun sequence
          Length = 49961

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 1/181 (0%)
 Frame = -3

Query: 23   FLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGSNPPKRFRLNR 82
            F  V    S++V R        GY ++ F + ++AER L  +N T+I G  P +     R
Sbjct: 6480 FNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGV-PCRIMWSQR 6304

Query: 83   SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE-GGISRGYGFV 141
              + +   +G   +IFV +LD ++ +  L D F   + ++   K+  +   G S+GYG+V
Sbjct: 6303 DPSLRKSGVG---NIFVKNLDVSIDNKALYDTF-SLFGNILSCKVAIDNTSGGSKGYGYV 6136

Query: 142  RFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPSTNSSTTDTTTASIPTAYDDA 201
             +        A+ ++ G+   G++   V V   + +      +  T+    +IP  +DDA
Sbjct: 6135 HYETAEAANEAIAKINGMLIAGSE---VFVGHFQKRQDRPDLADWTNCYVKNIPHNWDDA 5965

Query: 202  T 202
            T
Sbjct: 5964 T 5962



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
 Frame = -3

Query: 15   DETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGSNP 74
            D+  + K F       S  V++   +    G+ F+ F     A++ ++ +N   +   + 
Sbjct: 5973 DDATLRKEFEVFGSITSCVVMKDASSEGNRGFGFVNFDEPESAQKAVEALNDKVVGQEDG 5794

Query: 75   P---------------KRFRLNRSQAGKMWDIGP--SFSIFVGDLDATVTDDKLEDFFLK 117
                            +R   N+ +A KM  I      +++V +LD  + DD+L + F  
Sbjct: 5793 ADIALYVGKAQKRSERERELRNKFEALKMERINKYQGVNLYVKNLDDQLNDDELREAFTT 5614

Query: 118  RYRSVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK 175
               ++   +IM +  G SRG+GFV F+   E  +A+ +M G + +  KPI V++A  K
Sbjct: 5613 -CGTITSCRIMKDPSGNSRGFGFVCFATPEEATKAVTDMNG-KLVSGKPIYVALAQRK 5446


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,350,912
Number of Sequences: 1445
Number of extensions: 198624
Number of successful extensions: 2002
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 1209
length of query: 324
length of database: 17,710,878
effective HSP length: 104
effective length of query: 220
effective length of database: 17,560,598
effective search space: 3863331560
effective search space used: 3863331560
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)