TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    46   6e-19
gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    64   3e-10
gb|GL376586.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    62   6e-10
gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    51   2e-06

>gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039,
               whole genome shotgun sequence
          Length = 1829366

 Score = 45.8 bits (107), Expect(3) = 6e-19
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = -3

Query: 72      SNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKI 127
               +N   RFR+N    G+  + G   S+FVGDL   V+D+ L   F  R+ SV+GAK+
Sbjct: 1426749 ANTLHRFRMNWGAGGRRIETGDDHSVFVGDLAPDVSDELLLTTFSTRFSSVRGAKV 1426582



 Score = 43.5 bits (101), Expect(3) = 6e-19
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = -1

Query: 28      QPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTI 69
               QPV VK+IR K  G PAGY F+EFP++  A+ VL+  NG  I
Sbjct: 1426964 QPV-VKLIRDKVTGYPAGYGFLEFPTQRGAQLVLETYNGQVI 1426842



 Score = 42.7 bits (99), Expect(3) = 6e-19
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = -1

Query: 134     ISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPSTN 183
               +S+G+GFVRF ++ E  +ALQ M G+    ++P+RVSVAT +     S N
Sbjct: 1426490 MSKGFGFVRFGNKEEADQALQTMNGVY-CSSRPMRVSVATDRNGKPRSGN 1426344


>gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582011,
             whole genome shotgun sequence
          Length = 418791

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
 Frame = -2

Query: 4     SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
             ++++G+L+  + E  + +  LQ    ++V + R K       Y F+EF +E  AE  LK+
Sbjct: 31511 TVYVGNLDDRVTEELLWELMLQAGSVINVHMPRDKVTNTHQNYGFVEFRTEECAEYALKV 31332

Query: 64    VNGTTINGSNPPKRFRLNR-SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSV 122
             +N   + G    K  R+ + SQ  K  DIG +  +F+G+LDA V +  L D F      +
Sbjct: 31331 MNMIQLYG----KVMRVKKASQDKKNLDIGAN--LFIGNLDAEVDEKLLYDTFSAFGGII 31170

Query: 123   KGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQG 158
             +  KIM + E  +SRG+GF+ F        A++ M G
Sbjct: 31169 ETPKIMRDAETKVSRGFGFISFDSFEASDLAIECMNG 31059


>gb|GL376586.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581794,
              whole genome shotgun sequence
          Length = 282497

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
 Frame = -2

Query: 4      SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
              SL++GD+ P + E  + + F  V    S++V R        GY ++ F + A+AER L  
Sbjct: 165223 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDT 165044

Query: 64     VNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
              +N T+I G  P +     R  + +   +G   +IFV +LD ++ +  L D F   + ++ 
Sbjct: 165043 MNFTSIKGV-PCRIMWSQRDPSLRKSGVG---NIFVKNLDTSIDNKALYDTF-SLFGNIL 164879

Query: 124    GAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGI 159
                K+  +   G S+GYG+V +        A+ ++ G+
Sbjct: 164878 SCKVAIDNTTGASKGYGYVHYETAEAAHEAIAKINGM 164768



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 17/172 (9%)
 Frame = -2

Query: 21     KAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGT---TINGSN---- 73
              K F      +S  ++R  D  L  G+ F+ F     A + ++ +NG    T +GS+    
Sbjct: 164641 KEFKPFGPVLSAVIMRDADAELNRGFGFVNFEESEGAHKAVEALNGKVYQTADGSDLELY 164462

Query: 74     --------PPKRFRLNRSQAGKMWDIGP--SFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
                        +R   N+ +  KM  I      +++V +LD  + DD+L + F     ++ 
Sbjct: 164461 VGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLNDDELREAFASA-GTIT 164285

Query: 124    GAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK 175
               +++M ++ G SRG+GFV FS   E  +A+ EM G + +  KP+ V++A  K
Sbjct: 164284 SSRVMRDQNGNSRGFGFVCFSTPEEANKAVAEMNG-KLISGKPVYVALAQRK 164132


>gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020,
              whole genome shotgun sequence
          Length = 790859

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
 Frame = -2

Query: 65     NGTTINGSNPPKRFRLNRS---QAGKMWDIGP-------SFSIFVGDLDATVTDDKLEDF 114
              NG +  G +  K  +  R      G++W+           F +F GDL   V+D+ L   
Sbjct: 626878 NGVSAAGGHQGKNGKQKRHLRLAGGEVWEDQTLAEWPENDFRLFCGDLGNEVSDELLAHS 626699

Query: 115    FLKRYRSVKGAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVS 170
              F  RY S + AK++ ++    SRGYGFV F+D  +  +AL+EM G + +G +P++++
Sbjct: 626698 F-SRYASFQRAKVVRDKLTHKSRGYGFVSFTDPFDCAKALREMNG-KYIGNRPVKLT 626534


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,063,174
Number of Sequences: 82
Number of extensions: 157031
Number of successful extensions: 1574
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 831
length of query: 324
length of database: 14,267,206
effective HSP length: 102
effective length of query: 222
effective length of database: 14,258,842
effective search space: 3165462924
effective search space used: 3165462924
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)