TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    68   8e-12

>gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 28, whole genome shotgun
              sequence
          Length = 387582

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 66/289 (22%), Positives = 126/289 (43%), Gaps = 1/289 (0%)
 Frame = -1

Query: 4      SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
              SL++GDL P ++E+ + + F  V    S++V R        GY ++ F   A+AER +  
Sbjct: 302808 SLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDT 302629

Query: 64     VNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
              +N + I G  P +     R  + +   +G   +IFV +L+  + + +L D F   + ++ 
Sbjct: 302628 MNFSMIKGK-PCRIMWSQRDPSLRRSGVG---NIFVKNLNEAIDNKQLYDTF-SLFGNIL 302464

Query: 124    GAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPST 182
                K++ + EGG+S GYG+V +        A++++ G+   G +   V V     +     
Sbjct: 302463 SCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQE---VQVGHFMRRNDRPD 302293

Query: 183    NSSTTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQYCDYYNYQQQYSYYQQQAQ 242
                S T+    ++P  +DDA        ++ Q   Q+            ++     Q++ +
Sbjct: 302292 IDSWTNCYIKNVPYEWDDA--------RLNQEFAQFGEVLSATVSRGTRKHKPKVQKKPE 302137

Query: 243    NSQAYARANVEQYASTEHYQASRLHQQENNNNKLEDPNPAFNKEFENAA 291
              + +     N ++  S E  +     ++E    K ED N      F N A
Sbjct: 302136 SEETEEEKNEDEKESKELVET----KEEEGEKKEEDTNQTLGFGFINFA 302002



 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
 Frame = -1

Query: 36     RRKDNGLPAGYCFIEFPSEAEAERVLKLVNG----TTINGSNPPKRFRLNRSQ------- 84
              + +D     G+ FI F     A   ++ +NG    TT++G    ++  + R+Q       
Sbjct: 302052 KEEDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERER 301873

Query: 85     -------AGKMWDIGP--SFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYE-EGGI 134
                     A KM  I      +++V +LD +VTDD L D F     ++  A++M + + G 
Sbjct: 301872 ELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVM-GTITSARVMKDAKDGR 301696

Query: 135    SRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVA 172
              SRG+GFV +S   E  RA+ EM G + +  KPI V++A
Sbjct: 301695 SRGFGFVCYSTPEESTRAVNEMNG-KLIANKPIFVALA 301585


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,790,443
Number of Sequences: 31
Number of extensions: 100631
Number of successful extensions: 801
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 372
length of query: 324
length of database: 7,911,228
effective HSP length: 98
effective length of query: 226
effective length of database: 7,908,190
effective search space: 1787250940
effective search space used: 1787250940
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)