TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000032.1| Hyaloperonospora parasitica strain Emoy2 v-7....    97   4e-20
gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7....    62   9e-10
gb|ABWE01000399.1| Hyaloperonospora parasitica strain Emoy2 v-7....    57   4e-08
gb|ABWE01001524.1| Hyaloperonospora parasitica strain Emoy2 v-7....    51   2e-06

>gb|ABWE01000032.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont6.18, whole genome
             shotgun sequence
          Length = 116051

 Score = 96.7 bits (239), Expect = 4e-20
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 38/188 (20%)
 Frame = +3

Query: 28    QPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGS--------------- 72
             QPV +K+IR K  G PAGY F+EFP++  A++VL++ NG  +  +               
Sbjct: 79755 QPV-IKLIRDKVTGYPAGYGFLEFPTQRGAQQVLEMFNGQLVRKNFCFFINQKSRYNFLF 79931

Query: 73    ----------------------NPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDK 110
                                   N   RFR+N    G+  +     SIFVGDL   V D+ 
Sbjct: 79932 F*LIFVPILIILIFFGLMWCIENTVHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVGDEV 80111

Query: 111   LEDFFLKRYRSVKGAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRV 169
             L   F  R+ SV+GAK++ +    +S+G+GFVRF  + E  +ALQ M G+    ++P+RV
Sbjct: 80112 LLSTFNARFTSVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGV-FCSSRPMRV 80288

Query: 170   SVATPKGK 177
             SVAT + K
Sbjct: 80289 SVATERSK 80312


>gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont0.56, whole
            genome shotgun sequence
          Length = 25776

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 1/199 (0%)
 Frame = -3

Query: 4    SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
            SL++GD+ P + E  + + F  V    S++V R        GY ++ F + A+AER L  
Sbjct: 9049 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDT 8870

Query: 64   VNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
            +N T+I  S P +     R  + +   +G   +IFV +LD ++ +  L D F   + ++ 
Sbjct: 8869 MNFTSIK-SVPCRIMWSQRDPSLRKSGVG---NIFVKNLDLSIDNKALYDTF-SLFGNIL 8705

Query: 124  GAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPST 182
              K+  +   G S+GYG+V +        A+ ++ G+   G +   V V   + +     
Sbjct: 8704 SCKVAIDHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTE---VFVGHFQKRQDRPD 8534

Query: 183  NSSTTDTTTASIPTAYDDA 201
                T+    +IPT + DA
Sbjct: 8533 ADDWTNCYVKNIPTKWTDA 8477



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
 Frame = -3

Query: 38   KDNGLP---AGYCFIEFPSEAEAERVLKLVNG----------TTINGSNPPKRFRLNRSQ 84
            KDN  P    G+ F+ +     A R +  +NG          T I      KR    R  
Sbjct: 8422 KDNANPDQNRGFGFVNYDDSDSAHRAVDALNGKAYPVGDGVETDIYVGKAQKRTEREREL 8243

Query: 85   AGKMWDIG-------PSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEEGGISRG 137
              K   +           +++V +LD  ++DD+L + F++   ++  +++M +  G SRG
Sbjct: 8242 RNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFVE-CGTITSSRVMRDPNGNSRG 8066

Query: 138  YGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK 175
            +GFV FS   E  +A+ EM G   +G KP+ V++A  K
Sbjct: 8065 FGFVCFSTPEEANKAVAEMNGKLIVG-KPVYVALAQRK 7955


>gb|ABWE01000399.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont217.2, whole
             genome shotgun sequence
          Length = 44728

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
 Frame = +3

Query: 4     SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
             ++++ +L+  + E  + +  LQ     +V + R K  G    Y F+EF +E  AE  +K+
Sbjct: 39318 TVYVANLDDRVSEELLWELMLQTGSVCNVHMPRDKITGSHQNYGFVEFRTEECAEYAVKV 39497

Query: 64    VNGTTINGSNPPKRFRLNR-SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSV 122
             +N   + G    K  R+ + S   K+ D+G +  +F+G+LDA V +  L D F      +
Sbjct: 39498 LNMIQLYG----KVIRVKKASNEKKVLDVGAN--LFLGNLDAEVDEKLLYDTFSAFGGII 39659

Query: 123   KGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQG 158
             +  K+M + +  +SRG+GFV F        A++ M G
Sbjct: 39660 ETPKVMRDPDTRMSRGFGFVSFDSFEAADLAIECMHG 39770


>gb|ABWE01001524.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.27, whole
            genome shotgun sequence
          Length = 12533

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
 Frame = +3

Query: 82   RSQAGKMW-----DIGPS--FSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE-GG 133
            R   GK+W     D  P   F +F GDL   V+D+ L   F K Y S + A+++ ++   
Sbjct: 8778 RLAGGKVWEDLTLDDWPDNDFRLFCGDLGNEVSDELLAHSFAK-YASFQRARVVRDKLTH 8954

Query: 134  ISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVS 170
             SRGYGFV F+D  +  +AL+EM G + +G +P+++S
Sbjct: 8955 KSRGYGFVSFTDPFDCAKALREMNG-KYIGNRPVKLS 9062


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,803,392
Number of Sequences: 5422
Number of extensions: 247887
Number of successful extensions: 1737
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 837
length of query: 324
length of database: 22,486,378
effective HSP length: 105
effective length of query: 219
effective length of database: 21,917,068
effective search space: 4799837892
effective search space used: 4799837892
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)