TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis] (324 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000032.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 97 4e-20 gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 62 9e-10 gb|ABWE01000399.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 57 4e-08 gb|ABWE01001524.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 51 2e-06 >gb|ABWE01000032.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont6.18, whole genome shotgun sequence Length = 116051 Score = 96.7 bits (239), Expect = 4e-20 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 38/188 (20%) Frame = +3 Query: 28 QPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGS--------------- 72 QPV +K+IR K G PAGY F+EFP++ A++VL++ NG + + Sbjct: 79755 QPV-IKLIRDKVTGYPAGYGFLEFPTQRGAQQVLEMFNGQLVRKNFCFFINQKSRYNFLF 79931 Query: 73 ----------------------NPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDK 110 N RFR+N G+ + SIFVGDL V D+ Sbjct: 79932 F*LIFVPILIILIFFGLMWCIENTVHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVGDEV 80111 Query: 111 LEDFFLKRYRSVKGAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRV 169 L F R+ SV+GAK++ + +S+G+GFVRF + E +ALQ M G+ ++P+RV Sbjct: 80112 LLSTFNARFTSVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGV-FCSSRPMRV 80288 Query: 170 SVATPKGK 177 SVAT + K Sbjct: 80289 SVATERSK 80312 >gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont0.56, whole genome shotgun sequence Length = 25776 Score = 62.4 bits (150), Expect = 9e-10 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 1/199 (0%) Frame = -3 Query: 4 SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63 SL++GD+ P + E + + F V S++V R GY ++ F + A+AER L Sbjct: 9049 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDT 8870 Query: 64 VNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123 +N T+I S P + R + + +G +IFV +LD ++ + L D F + ++ Sbjct: 8869 MNFTSIK-SVPCRIMWSQRDPSLRKSGVG---NIFVKNLDLSIDNKALYDTF-SLFGNIL 8705 Query: 124 GAKIMYEE-GGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAPST 182 K+ + G S+GYG+V + A+ ++ G+ G + V V + + Sbjct: 8704 SCKVAIDHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTE---VFVGHFQKRQDRPD 8534 Query: 183 NSSTTDTTTASIPTAYDDA 201 T+ +IPT + DA Sbjct: 8533 ADDWTNCYVKNIPTKWTDA 8477 Score = 54.7 bits (130), Expect = 2e-07 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%) Frame = -3 Query: 38 KDNGLP---AGYCFIEFPSEAEAERVLKLVNG----------TTINGSNPPKRFRLNRSQ 84 KDN P G+ F+ + A R + +NG T I KR R Sbjct: 8422 KDNANPDQNRGFGFVNYDDSDSAHRAVDALNGKAYPVGDGVETDIYVGKAQKRTEREREL 8243 Query: 85 AGKMWDIG-------PSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEEGGISRG 137 K + +++V +LD ++DD+L + F++ ++ +++M + G SRG Sbjct: 8242 RNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFVE-CGTITSSRVMRDPNGNSRG 8066 Query: 138 YGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK 175 +GFV FS E +A+ EM G +G KP+ V++A K Sbjct: 8065 FGFVCFSTPEEANKAVAEMNGKLIVG-KPVYVALAQRK 7955 >gb|ABWE01000399.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont217.2, whole genome shotgun sequence Length = 44728 Score = 57.0 bits (136), Expect = 4e-08 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Frame = +3 Query: 4 SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63 ++++ +L+ + E + + LQ +V + R K G Y F+EF +E AE +K+ Sbjct: 39318 TVYVANLDDRVSEELLWELMLQTGSVCNVHMPRDKITGSHQNYGFVEFRTEECAEYAVKV 39497 Query: 64 VNGTTINGSNPPKRFRLNR-SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSV 122 +N + G K R+ + S K+ D+G + +F+G+LDA V + L D F + Sbjct: 39498 LNMIQLYG----KVIRVKKASNEKKVLDVGAN--LFLGNLDAEVDEKLLYDTFSAFGGII 39659 Query: 123 KGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQG 158 + K+M + + +SRG+GFV F A++ M G Sbjct: 39660 ETPKVMRDPDTRMSRGFGFVSFDSFEAADLAIECMHG 39770 >gb|ABWE01001524.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.27, whole genome shotgun sequence Length = 12533 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%) Frame = +3 Query: 82 RSQAGKMW-----DIGPS--FSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE-GG 133 R GK+W D P F +F GDL V+D+ L F K Y S + A+++ ++ Sbjct: 8778 RLAGGKVWEDLTLDDWPDNDFRLFCGDLGNEVSDELLAHSFAK-YASFQRARVVRDKLTH 8954 Query: 134 ISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVS 170 SRGYGFV F+D + +AL+EM G + +G +P+++S Sbjct: 8955 KSRGYGFVSFTDPFDCAKALREMNG-KYIGNRPVKLS 9062 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.315 0.130 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,803,392 Number of Sequences: 5422 Number of extensions: 247887 Number of successful extensions: 1737 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 442 Number of HSP's successfully gapped in prelim test: 99 Number of HSP's that attempted gapping in prelim test: 1080 Number of HSP's gapped (non-prelim): 837 length of query: 324 length of database: 22,486,378 effective HSP length: 105 effective length of query: 219 effective length of database: 21,917,068 effective search space: 4799837892 effective search space used: 4799837892 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)