TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom...    80   1e-14

>emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG26
          Length = 7107661

 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = -1

Query: 77      RFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEE-GGIS 135
               R+RLN    GK  +  P +S+FVGDL   VTD +L+  FL +Y SV GAK++     G S
Sbjct: 5706022 RYRLNWGAGGKRIEQAPEYSVFVGDLSPEVTDAELKATFLGKYTSVLGAKVVTNPMTGSS 5705843

Query: 136     RGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPK 175
               + +GF+RF DE E+  AL  M G    G +PIRV+ AT +
Sbjct: 5705842 KSFGFIRFGDEQERDEALTAMNGAECCG-RPIRVAPATKR 5705726


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,493,155
Number of Sequences: 35
Number of extensions: 900905
Number of successful extensions: 17723
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 4251
Number of HSP's gapped (non-prelim): 14875
length of query: 324
length of database: 65,311,373
effective HSP length: 113
effective length of query: 211
effective length of database: 65,307,418
effective search space: 13779865198
effective search space used: 13779865198
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 119 (50.4 bits)