TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    77   5e-15
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    55   2e-08

>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 77.0 bits (188), Expect = 5e-15
 Identities = 58/204 (28%), Positives = 97/204 (47%)
 Frame = +2

Query: 1      MSRSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERV 60
              +S SL++GDL+  + ET + + F  V+   SV++ R        GY ++ + S A+AER 
Sbjct: 692153 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 692332

Query: 61     LKLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYR 120
              L  +N T I G  P +     R  A +  + G   ++FV +LD ++ +  L D F   + 
Sbjct: 692333 LDTLNFTCIRG-RPCRIMWCLRDPASRRNNDG---NVFVKNLDKSIDNKTLFDTF-SLFG 692497

Query: 121    SVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAP 180
              ++   KI  +  G S GYGF+ F      K A+  + G   LG +PI V     K +   
Sbjct: 692498 NIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNG-AVLGDRPIYVGKFQKKAERFS 692674

Query: 181    STNSSTTDTTTASIPTAYDDATAY 204
                + + T+     IP ++ +   Y
Sbjct: 692675 EKDKTFTNVYVKHIPKSWTEDLLY 692746


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
 Frame = -3

Query: 68     TINGSNPPKRFRLNRSQAGKMW-----DIGPS--FSIFVGDLDATVTDDKLEDFFLKRYR 120
              +I  S+  KRFR     AG++W     D  P   F +F GDL   VT++ L + F K+Y 
Sbjct: 268082 SILDSHSKKRFR---KAAGQVWVDNTLDEWPENDFRLFCGDLGNDVTEEILANAF-KKYA 267915

Query: 121    SVKGAKIMYEEG-GISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMA 179
              S +  K++  +  G SRGYGFV F++  +   A++EM   + +G++PI +  +  K +  
Sbjct: 267914 SFEKCKVIRNKHTGKSRGYGFVSFTNPNDMLNAMKEMNR-KYVGSRPITLKRSKWKDREI 267738

Query: 180    PSTNSSTTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQY 224
               S  +   D  T    +A      Y Q+  + ++Y+D+++   +Y
Sbjct: 267737 DSDKNKRFDEMTRRNESANALVQDY-QKEYKKRKYSDKFQR*AKY 267606


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,823,807
Number of Sequences: 8
Number of extensions: 38987
Number of successful extensions: 1213
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 910
length of query: 324
length of database: 3,034,108
effective HSP length: 92
effective length of query: 232
effective length of database: 3,033,372
effective search space: 703742304
effective search space used: 703742304
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)