TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.14 of Capsaspora owczarzaki ATCC 30864                   83   2e-16
supercontig_1.3 of Capsaspora owczarzaki ATCC 30864                    58   1e-08
supercontig_1.2 of Capsaspora owczarzaki ATCC 30864                    56   4e-08

>supercontig_1.14 of Capsaspora owczarzaki ATCC 30864
          Length = 919646

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
 Frame = -1

Query: 112    EDFFLKRYRSVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSV 171
              + FF + Y S K AK++ ++ G  +G+GFVRF+D  +  RAL EM G  G G KP+RVS 
Sbjct: 430601 QSFFKQLYASCKTAKVVVDQAGTPKGFGFVRFTDSNDCLRALLEMNGAVGCGGKPMRVSA 430422

Query: 172    ATPK-----GKMAPSTNSSTTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQYCD 226
              ATPK      +++    +        S+ TA      Y QQ  Q QQ   Q +       
Sbjct: 430421 ATPKRPDLVSELSGGPATMLPGQEPTSMLTALQQLQLYQQQQQQQQQQQQQQQQQPAAQQ 430242

Query: 227    YYNYQQQYSYYQQQAQNSQAYARANVEQYASTEHYQASRLHQQ 269
               +   QQ       AQ  Q Y +   +Q    +  Q  + H Q
Sbjct: 430241 MFQQHQQLLQAILTAQQQQQYQQLQQQQQQQQQQQQQLQQHHQ 430113


>supercontig_1.3 of Capsaspora owczarzaki ATCC 30864
          Length = 2526540

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
 Frame = -3

Query: 19      VNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTINGSN----- 73
               +N  F +  +  SV +++  D+    G+ F+ +    +A+  +  +NGT + G       
Sbjct: 1004356 LNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVAR 1004177

Query: 74      ----PPKRFRLN-RSQAGKMWDIGP--SFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAK 126
                     +   L  R  A ++  I      +++V +LD  + +DK+   F   + ++   K
Sbjct: 1004176 AQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAP-FGTITSVK 1004000

Query: 127     IMYEEGGISRGYGFVRFSDEAEQKRALQEMQG--IRGLGAKPIRVSVA 172
               IM +E G SRG+GF+ FS   E  +A+ EM G  I+G   KP+ V++A
Sbjct: 1003999 IMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGF-PKPLYVALA 1003859



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
 Frame = -3

Query: 14      MDETFVNKAFLQVSQP----VSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKLVNGTTI 69
               +D+T  NKA L         +S KV+   D     GY F+ + ++  AE  +  VNG  I
Sbjct: 1004656 LDKTIDNKALLDTFSAFGNILSCKVVT--DENGSKGYGFVHYETQEAAETAIAKVNGMVI 1004483

Query: 70      NGSNPPKRFRLNRSQAGKMWDIGPSF-SIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIM 128
               NG        + R +  ++ +    F ++FV +L    TD  L D F K  +      + 
Sbjct: 1004482 NGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMK 1004303

Query: 129     YEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGK 177
                 +   S+G+GFV +    + + A+  + G   L  K + V+ A  K +
Sbjct: 1004302 SSDDDKSKGFGFVCYEKVEDAQAAVNALNGTE-LAGKTLFVARAQKKAE 1004159


>supercontig_1.2 of Capsaspora owczarzaki ATCC 30864
          Length = 2668053

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 15/199 (7%)
 Frame = -2

Query: 65      NGTTINGSNP-PKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVK 123
               N T++    P P     N +Q      +G    IFVG ++    +  L +FF K    V+
Sbjct: 2053979 NNTSLTAQRPAPFNSANNNAQRAPPATLG--HRIFVGGINWKGEESDLREFFAKLGTVVE 2053806

Query: 124     GAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVS--VATPKGKMAPS 181
                  I     G S+GYGFV FSD A    A+++MQ +  +G KP+ +S  V  PKG  A S
Sbjct: 2053805 CKIIADRVTGASKGYGFVSFSD-AHTAEAVKQMQNLVYMG-KPLHLSDAVRKPKGLDAKS 2053632

Query: 182     TNS------------STTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQYCDYYN 229
                 S            ++   T  S P     AT   + +  +   T   +  QQ      
Sbjct: 2053631 DGSDKGASSRGPLQYASLPPTHPSAPFGAPAATKPYETVGSLSAQTSALQQQQQQLQLLL 2053452

Query: 230     YQQQYSYYQQQAQNSQAYA 248
                QQQ    QQQ Q  Q +A
Sbjct: 2053451 QQQQQLLQQQQHQLQQFHA 2053395


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,701,525
Number of Sequences: 89
Number of extensions: 116051
Number of successful extensions: 5359
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 3349
length of query: 324
length of database: 9,347,932
effective HSP length: 99
effective length of query: 225
effective length of database: 9,339,121
effective search space: 2101302225
effective search space used: 2101302225
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)