TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno...    81   3e-16
gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 geno...    65   2e-11
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    50   7e-07

>gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole
             genome shotgun sequence
          Length = 367275

 Score = 81.3 bits (199), Expect = 3e-16
 Identities = 59/204 (28%), Positives = 99/204 (48%)
 Frame = +2

Query: 1     MSRSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERV 60
             +S SL++GDL+P + ET + + F  V+   SV++ R        GY ++ + S A+AER 
Sbjct: 31121 VSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 31300

Query: 61    LKLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYR 120
             L  +N T I  S P +     R  A +  + G   ++FV +LD ++ +  L D F   + 
Sbjct: 31301 LDTLNFTCIR-SRPCRIMWCLRDPASRRNNEG---NVFVKNLDKSIDNKTLFDTF-SLFG 31465

Query: 121   SVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAP 180
             ++   KI  +  G S GYGF+ F      K A+  + G+  LG +PI V     K +   
Sbjct: 31466 NIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMI-LGDRPIYVGKFQRKAERFS 31642

Query: 181   STNSSTTDTTTASIPTAYDDATAY 204
               + + T+     IP  + + T +
Sbjct: 31643 EKDKTFTNVYVKHIPKTWSEETLH 31714


>gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 genomic scaffold, whole
              genome shotgun sequence
          Length = 236830

 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
 Frame = -2

Query: 4      SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLKL 63
              +L+ G+L+  +DE  + + F Q     SV + R K  G  +G+ FIEF    + E   ++
Sbjct: 114306 TLYCGNLDNRVDEELLAELFAQTGPIKSVYIPRDKVTGTHSGFGFIEFQQVLDCEYAQRI 114127

Query: 64     VNGTTINGSNPPKRFRLNR-SQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSV 122
              +N   + G    K  R ++ SQ  K  DIG +  +FVG+L   + +  L D F   + +V
Sbjct: 114126 LNSVKLYG----KPIRCSKASQDRKQLDIGAN--LFVGNLSPDIDEKLLHDIF-SLFGNV 113968

Query: 123    KGAKIMYEEGGIS-RGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVA 172
                 K++++E     RGYGFV +        A+  + G +  G + I VS A
Sbjct: 113967 ISTKVIFKENNEDERGYGFVSYDSFNSSDNAIATLNG-QFFGNRQITVSYA 113818


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 60/272 (22%), Positives = 102/272 (37%), Gaps = 29/272 (10%)
 Frame = +3

Query: 5      LWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVL--- 61
              ++ G L      T +   F    + V   V+  K  G   G+ FI F SE   + VL   
Sbjct: 902328 IFCGGLSDVTTNTSLRTHFSPYGEIVDSVVLTEKTTGRSRGFGFITFASEESVDAVLASP 902507

Query: 62     KLVNGTTINGSN--PPKRFRLNRSQAGKMWDIGPSFS--------------------IFV 99
              ++V+G  I+     P    + N ++ G   D   + S                    IFV
Sbjct: 902508 QIVDGKEIDCKRAVPRGAIQTNETEGGDPGDNKVTSSVSSSGAVTNNNSSGTFNATKIFV 902687

Query: 100    GDLDATVTDDKLEDFFLKRYRSVKGAKIMYE-EGGISRGYGFVRFSDEAEQKRALQEMQG 158
              G L  + TD+KL + F K Y  +K   +M + +    RG+GFV +      +  ++    
Sbjct: 902688 GGLPQSCTDEKLREHFGK-YGMIKNLSVMVDRDTNRHRGFGFVEYESPESVEEVMRHYYD 902864

Query: 159    IRGLGAKPIRVSVATPKGKMAPSTNSSTTDT---TTASIPTAYDDATAYAQQLLQMQQYT 215
                 +  K +    A P+  MA   NS+  +       S+P     A  Y    + +    
Sbjct: 902865 -HQIDNKWVECKKALPREIMAGGANSNIANNRIIQAVSVPQISGYAEYYRNSYMPIHSGV 903041

Query: 216    DQYKYYQQYCDYYNYQQQYSYYQQQAQNSQAY 247
                 + Y +Y   ++ +  Y+ Y   A    A+
Sbjct: 903042 QGQQMYGRY-GRHDPRYMYASYGYAAAGPTAH 903134



 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
 Frame = -1

Query: 3      RSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLK 62
              R L++ +L   +    V K F Q        V++R  NG   GY F+ + +   A+   K
Sbjct: 518044 RRLYVKNLPFSVCTESVIKLFSQFGDVEEGIVLKR--NGKSRGYAFVTYKTIESAQLACK 517871

Query: 63     LVNGTTING-------SNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFF 115
                   T+NG       +  P  F   RS A +         +FV +L  T T+D L   F
Sbjct: 517870 --ESITVNGRVLMVKLAADPFPFEARRSDALRR-------KLFVRNLGFTTTEDSLSAVF 517718

Query: 116    LKRYRSVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQE 155
               K Y  ++ + I+    G SRGYGFV F +     +ALQ+
Sbjct: 517717 GK-YGELEESVILRTREGESRGYGFVTFVNTESTMKALQQ 517601


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,850,642
Number of Sequences: 84
Number of extensions: 39646
Number of successful extensions: 960
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 686
length of query: 324
length of database: 3,081,750
effective HSP length: 92
effective length of query: 232
effective length of database: 3,074,022
effective search space: 713173104
effective search space used: 713173104
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)