TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    65   3e-11
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    54   1e-07

>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
              sequence
          Length = 839707

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 3/189 (1%)
 Frame = +2

Query: 4      SLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAER---V 60
              SL++GDL+P + E  + + F  V   VSV+V R        GY ++ F +  +AER   V
Sbjct: 757205 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 757384

Query: 61     LKLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYR 120
              L+   G      N P R    RS   +  +  P  +IF+ +LD ++ +  L D F   + 
Sbjct: 757385 LQFYEGPLT--KNKPIRIMWKRSDPSQRRN--PEGNIFIKNLDKSIDNKALYDTF-STFG 757549

Query: 121    SVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKGKMAP 180
               V   K+  ++ G S GY FV + D    K  + +M G+  L  + + V    P+ +   
Sbjct: 757550 KVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGML-LNGQKVYVGEFRPRREREA 757726

Query: 181    STNSSTTDT 189
              +   ST  T
Sbjct: 757727 TGELSTKFT 757753



 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
 Frame = +2

Query: 43     PAGYCFIEFPSEAEAERVLKLVNGTTINGSN----------------PPKRFRLNRSQAG 86
              P G+ F+ F +  +A   ++ +NG  +NG                    +  +L   +  
Sbjct: 758078 PRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQ 758257

Query: 87     KMWDIGPSFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMYEEGGISRGYGFVRFSDE 146
              K+ D+    ++FV +L   V +++L + F  R+ ++   +IM +E G+S+G+GFV FS  
Sbjct: 758258 KLQDV----NLFVKNLSDDVDENRLREEF-SRFGTITSLRIMRDEKGVSKGFGFVAFSHP 758422

Query: 147    AEQKRALQEMQGIRGLGAKPIRVSVATPK 175
               E  +A+ EM   R +G KPI V++A  K
Sbjct: 758423 DEAIKAVTEMNQ-RIVGQKPIYVALAQRK 758506


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
              sequence
          Length = 1253087

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
 Frame = -3

Query: 3      RSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAEAERVLK 62
              R +++G L    +E  +   F +  + +   V+R ++ G P G+ F+ F  E  A+ V  
Sbjct: 958890 RKVFVGGLSWDTNEASLVAYFERFGKVIDAVVMRNRETGQPRGFGFVTFEEEGVAQAVAS 958711

Query: 63     L----VNGTTI--------NGSNPPKRFRLNRSQAGKMWDIG--PSFSIFVGDLDATVTD 108
              L    ++G  +        +  +P     ++ +Q      +G  PS  ++V  L    T+
Sbjct: 958710 LERHELDGRLVETKVAVPKSAEDPESNTVVDTAQRYGPSGLGEKPSRRVYVSGLPQACTE 958531

Query: 109    DKLEDFFLKRYRSVKGAKIMYEEG-GISRGYGFVRFSDEAEQKR 151
              D L  FF  R+ S++  +++ +   G+S+GYGFV F++ A  ++
Sbjct: 958530 DDLRAFF-SRFGSLEAVRVVVDHHTGLSKGYGFVVFAETAASQK 958402


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,195,613
Number of Sequences: 20
Number of extensions: 65046
Number of successful extensions: 569
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 272
length of query: 324
length of database: 5,515,582
effective HSP length: 96
effective length of query: 228
effective length of database: 5,513,662
effective search space: 1257114936
effective search space used: 1257114936
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)