TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|198421765|ref|XP_002125303.1| PREDICTED: similar to tRNA
selenocysteine-associated protein 1 (SECp43) [Ciona intestinalis]
         (324 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-t...    50   1e-10

>emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_11
          Length = 591523

 Score = 50.1 bits (118), Expect(2) = 1e-10
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
 Frame = -1

Query: 42     LPAGYCFIEFPSEAEAERVLKLVNGTTING--------SNPPKRFRLNRSQAGKMWDIGP 93
              L  G+ FI+F +E +A   L   NG  I          +     FRLN     +  ++G 
Sbjct: 355411 LRLGFGFIDFATEEDAIHALNGYNGRPIRFLVWFL*LLAGTGYTFRLNFGGNSRNLNLGD 355232

Query: 94     SFSIFVGDLDATVTDDKLEDFFLKRYRSVKGAKIMY 129
              ++ +++GDL+++VTD +L   F  +Y S  GAK+++
Sbjct: 355231 NYCLYIGDLESSVTDTQLYTIFRDKYLSFCGAKVLF 355124



 Score = 33.1 bits (74), Expect(2) = 1e-10
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 126    KIMYEEG-GISRGYGFVRFSDEAEQKRALQEMQG 158
              +IM E G  +S+GYGF++F    E + AL+EM G
Sbjct: 355103 QIMRETGTSVSKGYGFIQFRARDEAETALKEMNG 355002


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,067,237
Number of Sequences: 54
Number of extensions: 80427
Number of successful extensions: 1215
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 870
length of query: 324
length of database: 6,272,415
effective HSP length: 97
effective length of query: 227
effective length of database: 6,267,177
effective search space: 1422649179
effective search space used: 1422649179
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)