TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349453.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   119   7e-27

>gb|GL349453.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.21,
              whole genome shotgun sequence
          Length = 472482

 Score =  119 bits (299), Expect = 7e-27
 Identities = 63/148 (42%), Positives = 93/148 (62%)
 Frame = +3

Query: 630    RDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKL 689
              R+Y  Q++  E++  +  +LKEL R Q+R    +P KAK  RRLV GLREV+K +K+   
Sbjct: 357063 REYVDQLVPPELNRLIPPMLKELSRLQERARVLNPTKAK--RRLVTGLREVVKFVKVGTA 357236

Query: 690    KCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGI 749
              K VI++P+ EK+++ GGLDD +  I   A E  IP V+AL+R  LGR++ + + +SV  I
Sbjct: 357237 KAVIVAPDIEKVEADGGLDDKIAFIRTRAAELGIPLVYALSRNRLGRAMGRKLKISVAAI 357416

Query: 750    FSYDGAQDQFHKMVELTVAARQAYKTML 777
                YDG   +F++MVEL    R A+   L
Sbjct: 357417 LFYDGVNTEFNRMVELADEGRAAFDAAL 357500


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,569,277
Number of Sequences: 131
Number of extensions: 597983
Number of successful extensions: 8844
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 5682
Number of HSP's gapped (non-prelim): 6336
length of query: 854
length of database: 9,560,209
effective HSP length: 108
effective length of query: 746
effective length of database: 9,546,061
effective search space: 7121361506
effective search space used: 7121361506
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)