TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    61   5e-09

>gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.136,
             whole genome shotgun sequence
          Length = 76365

 Score = 61.2 bits (147), Expect = 5e-09
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 32/152 (21%)
 Frame = +3

Query: 621   FPKIHSRRFRDYCSQM-LSKEVDACVTDLLKELVRFQ----------------DRMYQKD 663
             FP   +     Y  ++ +  E+   VT LL  L++ Q                +R    +
Sbjct: 69882 FPSTRNAESLPYSQKIDVGGELQVGVTALLGRLMQLQVTALIHEDDTL*SHE*ERARLTN 70061

Query: 664   PVKAKTKRRLVLGLREVL---------------KHLKLKKLKCVIISPNCEKIQSKGGLD 708
             P+KAK  RRLV GLREV                + LK  K+ C++++ + ++  ++GGLD
Sbjct: 70062 PLKAKKTRRLVFGLREVATCLLGRRL*SSL*VKRGLKNLKVMCLLVAYDVDECAAEGGLD 70241

Query: 709   DTLHTIIDYACEQNIPFVFALNRKALGRSLNK 740
             D +  +ID A    IP VFAL++  +GR+ N+
Sbjct: 70242 DKIVELIDLARANKIPVVFALSKYDIGRATNQ 70337


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,431,937
Number of Sequences: 1445
Number of extensions: 752265
Number of successful extensions: 4859
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 3116
length of query: 854
length of database: 17,710,878
effective HSP length: 112
effective length of query: 742
effective length of database: 17,549,038
effective search space: 13021386196
effective search space used: 13021386196
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 119 (50.4 bits)