TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 61 5e-09 >gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.136, whole genome shotgun sequence Length = 76365 Score = 61.2 bits (147), Expect = 5e-09 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 32/152 (21%) Frame = +3 Query: 621 FPKIHSRRFRDYCSQM-LSKEVDACVTDLLKELVRFQ----------------DRMYQKD 663 FP + Y ++ + E+ VT LL L++ Q +R + Sbjct: 69882 FPSTRNAESLPYSQKIDVGGELQVGVTALLGRLMQLQVTALIHEDDTL*SHE*ERARLTN 70061 Query: 664 PVKAKTKRRLVLGLREVL---------------KHLKLKKLKCVIISPNCEKIQSKGGLD 708 P+KAK RRLV GLREV + LK K+ C++++ + ++ ++GGLD Sbjct: 70062 PLKAKKTRRLVFGLREVATCLLGRRL*SSL*VKRGLKNLKVMCLLVAYDVDECAAEGGLD 70241 Query: 709 DTLHTIIDYACEQNIPFVFALNRKALGRSLNK 740 D + +ID A IP VFAL++ +GR+ N+ Sbjct: 70242 DKIVELIDLARANKIPVVFALSKYDIGRATNQ 70337 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.310 0.127 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,431,937 Number of Sequences: 1445 Number of extensions: 752265 Number of successful extensions: 4859 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 180 Number of HSP's successfully gapped in prelim test: 123 Number of HSP's that attempted gapping in prelim test: 2994 Number of HSP's gapped (non-prelim): 3116 length of query: 854 length of database: 17,710,878 effective HSP length: 112 effective length of query: 742 effective length of database: 17,549,038 effective search space: 13021386196 effective search space used: 13021386196 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 119 (50.4 bits)