TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    87   3e-17

>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 46/140 (32%), Positives = 81/140 (57%)
 Frame = +2

Query: 630     RDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKL 689
               R Y + +  + V   +T++  EL+R Q R   ++    K KRRLV+GLREV + ++  K+
Sbjct: 1285895 RPYATLISDESVKPLLTEMFGELMRLQKRAVDEN--NTKVKRRLVMGLREVARGIRSHKV 1286068

Query: 690     KCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGI 749
               K V ++ N   +   G +D+ L  I+D A E  +P  +   ++ALG+ + K V ++VVG+
Sbjct: 1286069 KLVAMANN---LDDYGAIDEKLQEILDLADENEVPIFYEFTKRALGKVMGKTVKIAVVGV 1286239

Query: 750     FSYDGAQDQFHKMVELTVAA 769
                + +GA  QF K++ ++  A
Sbjct: 1286240 QNAEGAHQQFKKLLAISTKA 1286299


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,195,450
Number of Sequences: 31
Number of extensions: 330507
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 388
length of query: 854
length of database: 7,911,228
effective HSP length: 107
effective length of query: 747
effective length of database: 7,907,911
effective search space: 5907209517
effective search space used: 5907209517
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)