TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    71   1e-12

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 39/109 (35%), Positives = 63/109 (57%)
 Frame = -3

Query: 671    RRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALN 730
              R   +G+RE ++ L+ KKLK +I++P+ E    +G L   +  I+  A E NIP +FALN
Sbjct: 826356 RVFTVGVREAMRCLRHKKLKALIVAPDIEGDGVEGSLRHHVIHILLQAQELNIPTIFALN 826177

Query: 731    RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN 779
              R  +GR++ K + +SV+G+ S  G + QF  +       R+ Y   +EN
Sbjct: 826176 RHRIGRAMGKHMRMSVLGLLSIRGVEKQFQAISHTAQLLRKLYHFCIEN 826030


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,812,427
Number of Sequences: 8
Number of extensions: 88532
Number of successful extensions: 548
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 423
length of query: 854
length of database: 3,034,108
effective HSP length: 100
effective length of query: 754
effective length of database: 3,033,308
effective search space: 2287114232
effective search space used: 2287114232
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)