TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.14 of Capsaspora owczarzaki ATCC 30864                   77   2e-30
supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    52   1e-06

>supercontig_1.14 of Capsaspora owczarzaki ATCC 30864
          Length = 919646

 Score = 76.6 bits (187), Expect(2) = 2e-30
 Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
 Frame = +1

Query: 705   GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVE 764
             GGLDD + +I+  A  Q+ P VFALNR+ + R+LN  VPVS VGIF++DG   ++  M+ 
Sbjct: 88435 GGLDDAISSILTEAHAQDRPVVFALNRRKIARALNIHVPVSAVGIFTFDGLHQEYKSMLL 88614

Query: 765   LTVAARQAYKTMLENVQQELVGEPRP------QAPPSLPTQGPSCPAEDGPPALKEKEEP 818
              +   R AY  MLE    + V  P P       AP    T   S   +  P  L E   P
Sbjct: 88615 QSTEGRLAYFAMLEATHAQWVETPPPTALADSSAPSGSTTPSSSNSVDHAPVPLTEPIAP 88794



 Score = 75.9 bits (185), Expect(2) = 2e-30
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
 Frame = +2

Query: 599   EPPGTELQRDTEASHLAPNHTTFPKIHSRRFRD---YCSQMLSKEVDACVTDLLKELVRF 655
             E P +E+ R    SH          +HS        YCSQ +  E+D+    +LK+L +F
Sbjct: 88025 EAPFSEVSRVKRCSHCLVRVVFAHSVHSHSLPQSHRYCSQKVGAELDSATAIVLKQLHKF 88204

Query: 656   QDRMYQK-DPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKG 705
             Q+R     DP KAK +R  V+GL+EV KHL+  KL+C+I++P+ E ++S G
Sbjct: 88205 QERRLATIDPNKAKQRRWFVVGLKEVFKHLQRGKLRCLIVAPDIESVRSAG 88357


>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 64/318 (20%), Positives = 119/318 (37%)
 Frame = -1

Query: 311    ELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGS 370
              E +A P N   + N + +A+ +  +N S  S+ A +S                S+ASQ  
Sbjct: 786750 ETAAQPDNARDLDNKRNLAAKSQ-ENASRASTSASASH---------------SQASQSG 786619

Query: 371    DLEQNEASRKNKKKKEKSTSKYEVLTVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSK 430
                   ++  +N +++++   K +    Q+P + +  +         +++ + E PK Q +
Sbjct: 786618 QASHRQSDGRNSRQEQQQQPKQQQ---QQPKQQQQEQPKQQQQQQQKQQQQQEQPKQQQQ 786448

Query: 431    QQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVSVGAVPVLSKECA 490
              +QP+   K   ++ Q P             K+Q  Q  KQ                    
Sbjct: 786447 EQPKQQSKQ--QQQQQP-------------KQQQQQQPKQQQ------------------ 786367

Query: 491    SGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQEN 550
                ++ ++  Q +    P D      ++G  +E P AK          + +++ KQR Q  
Sbjct: 786366 --QQQQQQQQKQQQQQPKDQKQQ-QQQGAPQEKPDAKVQDEAAPQSSQPQEQSKQRRQRG 786196

Query: 551    AVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTE 610
                      D+        + Q PEQ +   P+  D+  S P  E K +  P T  + + E
Sbjct: 786195 G-----RRDERGKERQQSEKQQPEQQQQQQPQQTDQTQSVPQSEQK-QSVPQTASKHEAE 786034

Query: 611    ASHLAPNHTTFPKIHSRR 628
               S   P     PK  +R+
Sbjct: 786033 PSRNQPQPQREPKNRARQ 785980


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,494,616
Number of Sequences: 89
Number of extensions: 428508
Number of successful extensions: 5085
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 4781
length of query: 854
length of database: 9,347,932
effective HSP length: 108
effective length of query: 746
effective length of database: 9,338,320
effective search space: 6966386720
effective search space used: 6966386720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)