TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 geno...    70   3e-12

>gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 genomic scaffold, whole
             genome shotgun sequence
          Length = 567910

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 37/109 (33%), Positives = 64/109 (58%)
 Frame = -2

Query: 671   RRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALN 730
             R   +G+RE ++ L+ KKL+ +I++P+ E    +GGL   +  I+  A E NIP +FALN
Sbjct: 47313 RVFTVGVREAMRCLRHKKLQALIVAPDIEGGDIEGGLRHHVIHILMQAQEFNIPVIFALN 47134

Query: 731   RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN 779
             R  +GR++ K + +SV+G+ S  G + QF  +       ++ Y   +E+
Sbjct: 47133 RHRIGRAMGKHMRMSVLGLLSTRGVERQFQTVAHTAKVLQRLYNFCIEH 46987


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,606,146
Number of Sequences: 84
Number of extensions: 84307
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 180
length of query: 854
length of database: 3,081,750
effective HSP length: 100
effective length of query: 754
effective length of database: 3,073,350
effective search space: 2317305900
effective search space used: 2317305900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)