TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117167838|gb|AAI15504.2| Pstk protein [Mus musculus]
         (295 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    60   2e-09

>gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582036,
              whole genome shotgun sequence
          Length = 1090657

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 66/256 (25%), Positives = 94/256 (36%), Gaps = 37/256 (14%)
 Frame = +2

Query: 3      TAAARGATRRDGQPKLGLCVLCGLPAAGKSTFARALALRL---------RRERGWAVGVL 53
              TA   GAT  DG P + L  LCGLP AGK+T    LA            R  R W    L
Sbjct: 569948 TAMMMGATN-DGAPTV-LIALCGLPGAGKTTLVSRLACNTSHSAAATGDRPMRRWWCERL 570121

Query: 54     SYDDVLPLALPDCDGTQPRPSQWKMFRQELLKHLECFLVAVISGAQMSAPPNRTEAVWED 113
              S+DD+L         T   P+ WK  ++E++  ++ +  A       +  P  + +V E+
Sbjct: 570122 SFDDLLASYSSSTSQTDFDPALWKHCQREMVARVKVWRKAREGATATTVTPAGSVSVSEE 570301

Query: 114    FITCLKSQDLMIFPTALEAQPCHLLAKPAVSRPLFLVLDDNFYYQSMRYEVYQLA----- 168
                                             R L L++DDNF Y+S R    QLA     
Sbjct: 570302 ------------------------------ERILVLLVDDNFQYRSQRKRFCQLACEGEQ 570391

Query: 169    ---------------------RKYSLGFCQLFLDCPLETCLKRNGERS--QPLPDETIQL 205
                                        GF  L +D P+  C +RN  R     +PD   + 
Sbjct: 570392 SVACTTCASSFTTCAYTVVLLHVVDCGFGILHVDTPVALCRQRNAARDGVARVPDAVFER 570571

Query: 206    MGRKIEKPNPEKNAWE 221
              M    E P+ +++A E
Sbjct: 570572 MVSVFEAPDGDQHACE 570619


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,712,569
Number of Sequences: 82
Number of extensions: 308702
Number of successful extensions: 1696
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1575
Number of HSP's gapped (non-prelim): 333
length of query: 295
length of database: 14,267,206
effective HSP length: 101
effective length of query: 194
effective length of database: 14,258,924
effective search space: 2766231256
effective search space used: 2766231256
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)