TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|316967313|gb|EFV51751.1| putative L-seryl-tRNA(Sec) kinase
[Trichinella spiralis]
         (355 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    53   2e-07

>gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 30, whole genome shotgun
              sequence
          Length = 317207

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 7/197 (3%)
 Frame = -3

Query: 40     IVFGIPACGKTSLCKRIVDFFNADESNRSDIHVVHICYDEILEHAKLCTN-----QWKSM 94
              +V G+P CGK++L + +    +  +   S IHV ++ YD + E      N      W+  
Sbjct: 118230 LVCGLPGCGKSTLARSLCS--SCTDDPHSPIHVDYVEYDALQETLARRDNLTPLEAWRRT 118057

Query: 95     RNMILDSVDAVAVGLNSKDAYVKPAAVDADIWNKIVALVPNFDATWSKIIFLIDDNMYYR 154
              R + L+ V           +++  A     I        P         + L+DDN + R
Sbjct: 118056 RTVALEHV----------RSFLTHAVTTGPIVTNTQPQQPA-----QPHVLLLDDNFHLR 117922

Query: 155    SMRFSYYRLARKRELLLSFRPSIVYDQFGFCQLYMQCDLERALIQNRGRKPDAVVSDETI 214
               MR   YR+ R      SF    V   FG   L +  D  RAL +N GR P   V+  T 
Sbjct: 117921 GMRQQVYRVCR------SFVTPTVAVAFGIAWLAVPSD--RALSRNAGRDPPRRVTTVTW 117766

Query: 215    KRMAEKIQ--IPAEKWE 229
               R+A   +   P   WE
Sbjct: 117765 DRLAAAAEPPDPTRSWE 117715


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.325    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,155,754
Number of Sequences: 31
Number of extensions: 151709
Number of successful extensions: 976
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 30
length of query: 355
length of database: 7,911,228
effective HSP length: 99
effective length of query: 256
effective length of database: 7,908,159
effective search space: 2024488704
effective search space used: 2024488704
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)