#!/bin/bash

export PATH=/cursos/BI/bin/exonerate/i386/bin:$PATH
export PATH=/cursos/BI/bin:$PATH

for fastasubseq in fastasubseqSelO_A.taiwanensis.fa fastasubseqSelO_B.hominis.fa fastasubseqSelO_C.merolae.fa fastasubseqSelO_C.muris.fa fastasubseqSelO_C.owczarzaki.fa fastasubseqSelO_C.parvum.fa fastasubseqSelO_E.siliculosus.fa fastasubseqSelO_H.arabidopsidis.fa fastasubseqSelO_N.gruberi.fa fastasubseqSelO_P.pallidum.fa fastasubseqSelO_P.tricornutum.fa fastasubseqSelO_P.ultimum.fa fastasubseqSelO_S.parasitica.fa fastasubseqSelO_T.trahens.fa ;
do {


	
fastaseqfromGFF.pl $fastasubseq alineament_$fastasubseq.exonerate.gff > cDNA_$fastasubseq
	



} done