T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:7 sec.
SCORE=85
*
 BAD AVG GOOD
*
Query_Homo        :  86
B.hominis         :  88
C.merolae         :  72
C.muris           :  82
C.owczarzaki      :  84
C.parvum          :  77
E.siliculosus     :  83
H.arabidopsidis   :  86
N.gruberi         :  87
P.pallidum        :  87
P.tricornutum     :  86
P.ultimum         :  86
S.parasitica      :  86
T.trahens         :  86
cons              :  85

Query_Homo        MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER
B.hominis         ------NINVGVMGHVDSGKTSLVKSLSAILSTASLDKNPQSRQR
C.merolae         ---RFLNINVAVMGHVDVGKTTLVRFLSEILSTAALDKHPASREL
C.muris           ---------------------------------------------
C.owczarzaki      ---RVLNVNLGVLGHIDSGKTALAKALSTVASTAAFDKNPQSQAR
C.parvum          ---RQATINLGTIGHVAHGKSTVVRAVSGVQTVRFK----DEKER
E.siliculosus     -----LNINVGILGHVDSGKTSLVKALSTVLSTASLDKNPQSRER
H.arabidopsidis   -----VNVNVGVLGHVDSGKTSLVRALSTHLSTAALDKSPQSQRR
N.gruberi         ------------------GKTSLCKALSTHASTAAFDKSPQSKER
P.pallidum        ---KPLNINIGIMGHVDSGKTSLAKALSTSLSTAALDKSPASQER
P.tricornutum     -----LNVNLGVLGHVDSGKTSLVKALSTLLSTAALDKSKQSRQR
P.ultimum         -----VNVNVGVLGHVDSGKTSLVRVLSTQLSTAALDKHPQSQQR
S.parasitica      -----VNVNVGILGHVDSGKTSLVRSLSTHLSTAALDKNPQSKAR
T.trahens         A-SRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVR

cons                                                           


Query_Homo        GITLDLGFSCFSV--------PLPARLRS-SLPE--FQAA-----
B.hominis         GITLDLGFSAFLS--------DIPSHISSXLSW------------
C.merolae         GRTIDLGFSCTRL--------PASPVVVQ-LVDD--EA-------
C.muris           ---------------------------------------------
C.owczarzaki      GITLDLGFSSLSVT-------PMPEHLAG-NAAT--TSAL-----
C.parvum          NITIKLGYANAKIYKCTNPNCPPPKCYRS-YGSN--KEDEPMCE-
E.siliculosus     GITLDLGFSAFTV--------SLPEHLPH-LTGH--EVFA-----
H.arabidopsidis   GITLDLGFSSFRL--------DIRK--------------------
N.gruberi         GITQDLGFSAFYS--------DSPL--------------------
P.pallidum        GITLDLGFSAFHS--------ELPDRLKS----------H-----
P.tricornutum     GMTLDLGFSCFFL--------DMPSHLQ-----------------
P.ultimum         GITLDLGFSAFRV--------PHEQLIKD----------------
S.parasitica      GITLDLGFSSLQL--------PFTA--------------------
T.trahens         GITLDLGFSALRV--------PLPPALAG-LRLDGHDDGT---PD

cons                                                           


Query_Homo        ----------------------PEAEPEPGEPLLQVTLVDCPGHA
B.hominis         ----------------------VIKIG-DKYKYIQYTLVDCPGHA
C.merolae         -----------------------ASLENVSYEGLQLTWIDCPGHA
C.muris           -------------------------------PRYEYTVIDAPGHR
C.owczarzaki      ----------------------VQSVTDLAYDRLQFTLVDCPGHA
C.parvum          ----------------------VPSCNHKMQLLRHVSFVDCPGHD
E.siliculosus     ----------------------PPSTAAAFTRTLPTRQVDCPGHA
H.arabidopsidis   ----------------------------GGPSFLQVTLVDCPGHT
N.gruberi         ----------------------------SEYDRIQYTLVDCPGHA
P.pallidum        ----------------------PDVIA-NNYNQIQYTLVDCPGHA
P.tricornutum     -------------------------ASYPDKKNLQITLVDCPGHA
P.ultimum         ------------------------GSAAIENTDIQITLVDCPGHA
S.parasitica      --------------------------ASGEAYTAQLTLVDCPGHA
T.trahens         ICSGTTSGNDTGDHPGKEDESGLLTVG-DKYDEIQFTLVDCPGHA

cons                                                    :*.*** 


Query_Homo        SLIRTIIGGAQIIDLMMLVIDVTK-----GMQTQSAECLVIG-QI
B.hominis         SLIRTILGGAQIIDMLIIVIDCLK-----GIQAQTAECIVIG-EI
C.merolae         SLLRTVLLGASVMDLLLLVVDASA-----GIQAQTLECLALA-AI
C.muris           DFIKNMITGTSQADVALLVVPADRFEGAFSKEGQTREHALLAFTL
C.owczarzaki      DLIRTIIGGAQIIDMMMLVVDVNK-----GIQTQTAECLVIG-EI
C.parvum          ILMSTMLNGAAVMDAALLLVAGNE--T--CPQPQTSEHLAAV-EI
E.siliculosus     SLIRTIIGGAQIMDMMLLVVDATK-----GIQAQTTECVVIG-EA
H.arabidopsidis   SLFQTVLGGAAIIDTVVLVTDCRK-----GLEAQTIESLLLA-SL
N.gruberi         SLIRTIIGGAQIIDFMVLVIDAVK-----GVQTQTAECIVIG-EI
P.pallidum        SLIKTIIGGSQIIDMMFLVIDITK-----GIQTQTAECIVIG-EI
P.tricornutum     SLIRTIIGGAQIIDMVLLVVDAVK-----GWQAQTTECLVLA-EL
P.ultimum         SLFKTILGGARIIDMVLLVVDAQK-----GLQPQTIESLLVA-EL
S.parasitica      SLIKTVIGGAHIIDMALLVIDAVK-----GIQMQTIESTVLA-EI
T.trahens         SLIKTIIGGASIIDIMVLVVDAKA-----GFQTQTAECLVIG-EL

cons               :: .:: *:   *  .::            : *: *        


Query_Homo        AC---QKLVVVLNKIDLL-PE--GKRQAAIDKMTKKM-QKTLENT
B.hominis         TT---NKAIIALNKIDLI-PE--AERSDRIKTVISSL-QKTLSKT
C.merolae         FT---KHVVVALHKCDRV-RD--QP--AVLEERLQQL-QAYVSTN
C.muris           GV---KQMIVGINKMDTC-D--Y--KQSRYDEIHNEV-EGYLKKV
C.owczarzaki      MC---DILVVALNKIDQI-PE--DQRAQTIEKVTRGL-AKTFATT
C.parvum          MKL--KHIIILQNKVELI-KE--AQAQEQ----YKQI-KDFVAGT
E.siliculosus     VMSSGADVIVVLNKVDLI-PE--QERKARLRQAETEI-AAQLAGT
H.arabidopsidis   VCP--RKLVIVLTKTDLL-SALDVERAAAIGAVTSEV-QTFVATH
N.gruberi         SC---NNLIVALNKVDMI-PA--DQREDRVDKIKKSLIKNVFSQT
P.pallidum        TC---KKAIVVLNKIDQL-PI--ESRQNKIDVMTNKL-KKVLEKT
P.tricornutum     TS---PYLVVALNKADQF-PP--PERDQLLEQAAAKI-RDRLKAT
P.ultimum         AVA--HHVVIALNKVDLLLPE--SEREVRIRSLETEI-QRVLDAK
S.parasitica      AT---SHVIVVLNKVDLL-T--DK--ATQLPAMLATI-RTFLSSS
T.trahens         TA---DTLMVALNKIDLF-PE--EKRASKVAKMTKRV-AATLKPT

cons                      ::   * :                    :    .   


Query_Homo        ----KF-RGAPIIPVAAKPGGPEAP-------ETEAPQGIPELIE
B.hominis         ----RF-KNASIVWMCYVF--------------------------
C.merolae         ----RWWLPTPLATIPTWIGT------------------------
C.muris           --GYNI-EKIPFVAISGFVGDNMVEK-----SDKMPWYKGRTLVE
C.owczarzaki      ----KF-GQVAVIPVAARPATGPA-------------IGVENLIQ
C.parvum          ----SA-QDAPIIPISAVLK-----------------FNIDVLCE
E.siliculosus     ----KL-SSASFVSCAAAVGGEKTA-------ASTPPAGIDTVAG
H.arabidopsidis   FSSLKD-VTIPVVPVVVGTGH--------------KTEGIPHLLE
N.gruberi         ----KF-KNPPIVSVCADPREE-SE-------SITKEQGLKNLIA
P.pallidum        ----CF-KDSPYVAISANPSSSSDAAPASAAATGDNNIGVDRLIK
P.tricornutum     ----RF-ANAPIVGVAACVGGEKLE-------VRNETYNMETLVQ
P.ultimum         FPRLRG-QNVPIVAVAAAPADSA----------DEAKVGISTLVE
S.parasitica      ---PTL-QDCPIVPVAAGDADGA-----------RAPQGMPDLLA
T.trahens         ----AF-ANSDILPVSASSG-----------------DGLSDLVD

cons                                                           


Query_Homo        L------LTSQISIPTRDP-SGPFLMSVDHCFSIKG--------Q
B.hominis         ------------KIDSCIC-ATPLYFIYDHCFQLAG--------K
C.merolae         ---------------------------------------------
C.muris           A------L-DTMEPPKRPT-EKPLRLPLQDVYKIGG--------V
C.owczarzaki      VVQVEAVLAKSVPRQRHDS-AAPFVFAVDHCFAIKG--------Q
C.parvum          Y------ICTQIPIPIRDF-TSSPRMIIIRSFDVNKPGEDAQNMR
E.siliculosus     E------LSRRARVPSRRA-SAPLYFAFDHCFSVRG--------Q
H.arabidopsidis   V------LRTHLQAPERDT-SGDFRLAVDHCFAVPG--------H
N.gruberi         E------FQKHVKISEKDE-NEPFLYMVDHCFTIKG--------K
P.pallidum        E------LTNYVELPRRDD-QGPFLFEFDHCFQIKG--------Q
P.tricornutum     T------LQDKLPPPKRTP-EGSFYFSVDHCFSIRG--------R
P.ultimum         T------IRSHLYLPERNP-TGPFSLAIDHCFAIQG--------N
S.parasitica      T------MQRHLHLPTRSG-DGPLCYAIDHCFPLRG--------K
T.trahens         A------LTAAVRLPTRNEAEDAFLFAIDHCFQVKG--------Q

cons                                                           


Query_Homo        GTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQ
B.hominis         GCVMTGTVLSGSVSVNDEIEFPSLHLTRKVKSIQMFHKGIDKVLK
C.merolae         ---------------------------------------------
C.muris           GTVPVGRVETGIIKPGMNVTFAPVGITTEVKSVEMHHEQLSEAGP
C.owczarzaki      GTVLTGTALSGQIQVNENIEIPTAKLSRKIKSIQMFHRPVQQITA
C.parvum          GGVAGGSIIKGVLKIGDEIE-------------------------
E.siliculosus     GTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKPVSIARA
H.arabidopsidis   GTVLTGTVLSGALSKGSELELLPSGMKTTVKTLQVFRQDVERCVQ
N.gruberi         GTIITGTVLQGSVSIGKTIQIPSIGEEKKVKSIQMFKTPVDKAIK
P.pallidum        GSVMTGTVLRGSVEINQNIHIPQLNIEKKVKSMQMFHKPVKKASQ
P.tricornutum     GTVLTGTVLNGAASVNDVLEFPTLGLDRKIKSIQMFKRQVQRIQQ
P.ultimum         GTILTGTVLSGSVKVNDEVEIPSLQVVKKVKSMQMFKQSVTSATQ
S.parasitica      GTVLTGTVLSGTVRVNDTIAIPILGTEKKVKSLQMFHTSVEKAIQ
T.trahens         GTVVTGTIQRGSVAVGQTIEFPALGLSKKVKSMQMFKAPVERAVQ

cons                                                           


Query_Homo        GDRLGICVTQFDPKLLERGLVCA-PESLHTVHAALISVEKIPYFR
B.hominis         GDRAGIC--------------------------------------
C.merolae         ---------------------------------------------
C.muris           GDNVGFNVKNVSIKDIKRGY-------------------------
C.owczarzaki      GDRAGICVTQFDASTLERGYACA-AGAVIFAHALIARVDKVRFFK
C.parvum          ---------------------------------------------
E.siliculosus     GDRVGMCVASLDAKLMERGVVTT-PGSVRPISAAIALVRKVPAFT
H.arabidopsidis   GDRVGLRVNGLDPALVERALAVSPPGSLPAVTQVVIAVARVPLFQ
N.gruberi         GDRIGIAVTKLDSKKLERGFACD-KGYIEIVDTILANASRIRFFK
P.pallidum        GDRVGICVTQLDANLLERGLLCT-PKTVPLLNGAIVAIEKVRFYK
P.tricornutum     GDRAGVCVSNLDAKLLERGIAAT-PGAVQLLKGAIALVRKVPYYV
P.ultimum         GDRVAIRVNGLDASLVERGMAIT-PHSMPYVTQVVVPVHQIAFFQ
S.parasitica      GDRVGLRLHGLDAATLERGLAIT-PKSLSFVLNLVLQVHRVRFFG
T.trahens         GDRLGICVAQLNAKLLERGLACA-PGTIRAVSAAVVRVSRIPYFR

cons                                                           


Query_Homo        G-PLQTKAKFHITVGHETVMGRLMFFSPAPDNF-DQEP-------
B.hominis         ---------------------------------------------
C.merolae         ---------------------------------------------
C.muris           ---------------------------------------------
C.owczarzaki      L-PVLSKSRFHVSMGHETVMGTASFFTRAAWPF-PFYSCV---VR
C.parvum          ---------------------------------------------
E.siliculosus     G-QCLSGAYCHVSLGHSTAMATATFFGASELKN-GLL--------
H.arabidopsidis   GGACKSGAKCHATVGHATVIATATFFA------------------
N.gruberi         K-EIKNSAKYHISIGHETVMGNVSLIARAKKEG-L----------
P.pallidum        N-EVKTKSQFHVTIGHSTVIATAIFFGNKKQQT-EQQQQQ---PE
P.tricornutum     G-TLHSGSKFHISVGHTTIMATVTFWGAVELL-VDTKPSKRYVGS
P.ultimum         G-TCKSGAKFHATINHTTVVAIATFFSPMHGAKFTTKT-------
S.parasitica      L-DCESGAKVHVTVGHSTVLAKATFFHGSHAS-FAVEN-------
T.trahens         G-EIKSRAKFHLTVGHETVMATLQFFRSVGPGE-DPHGLASTASS

cons                                                           


Query_Homo        ------------------ILDSFNFSQEY-LFQEQYLS----KDL
B.hominis         ---------------------------------------------
C.merolae         ---------------------------------------------
C.muris           ---------------------------------------------
C.owczarzaki      A------------SLDGEGNARFEVDKEY-AFAEELGR-------
C.parvum          ---------------------------------------------
E.siliculosus     --------------------GLFEHSADGLKALEALRDAGQGQDL
H.arabidopsidis   ---------------------------------------------
N.gruberi         ------------------SSNIFDTTVEY-SLLEELTE-------
P.pallidum        T------------MIENMTLNQFNSKLEY-SYLDSL---------
P.tricornutum     SS------LGGDADMAGLPRMTFSFEEEF-IHQDDLL--------
P.ultimum         ---------------------QFEPLRLY-EYVAQIE--------
S.parasitica      --------------------------TEY-RYLATLP--------
T.trahens         SSAASSSDAASAADSAPHPAHVFSYDDEY-LDVSELEG-------

cons                                                           


Query_Homo        TPAVTDNDEADK--KAGQATEGHCPRQQWALVEFEKPVTCPRLCL
B.hominis         ---------------------------------------------
C.merolae         ---------------------------------------------
C.muris           ---------------------------------------------
C.owczarzaki      --PPQEN--------ASNSGQPPAPLATFALIELDHPVACLSNAL
C.parvum          ---------------------------------------------
E.siliculosus     SLSSENSI-AGA--D-DEVCVDERPLLQYCHLTFHTPVITPPSSV
H.arabidopsidis   ----------------------------FALLQFERAVFCPPATL
N.gruberi         ------------------T--TYQEKDVFVKIEFEKPVCCYPNSN
P.pallidum        ----------------NATGQEYPVGSQYALLTFEHPVLCPLNSV
P.tricornutum     -----------------ESLDGQESLLHWALLDFQIPVHCPMDSL
P.ultimum         -PIADANS-GGSDLKAVEEGKEIKSVSYFALLQFDQPVLCPRDAL
S.parasitica      -------------------A--SATDHLFVLLQLEREILVPPFSH
T.trahens         ------------------PEAYPTGSTTYAVLELESPVLCAPDAM

cons                                                           


Query_Homo        VIGSRLDADI----HTNTCRLAFHGILLHGLEDRNY-ADSFLPR-
B.hominis         ---------------------------------------------
C.merolae         ----------------DARRTAFERH-------------------
C.muris           ---------------------------------------------
C.owczarzaki      LIGSRLDLDPD--VHTKACRLAFSGRVHEALTDKSY-RETFLPK-
C.parvum          ---------------------------------------------
E.siliculosus     VLGSRLDSTS----SSPNKTEAAHPT---ALDFG-----TQAGQ-
H.arabidopsidis   VVCSRLDLDAK----RFSCRLAFYGTVECVVGSSSEEL-DMLSS-
N.gruberi         YIASKLDTDI----NANMCRLAFNGKVIKMWNKSNVSKEQLVNS-
P.pallidum        IIGSKLDVNL----DTSSCRIAFHGELVEGIDVTN--KQLLNNH-
P.tricornutum     VIGSRLDTVDNSTGSASACRLAFSGRLMQSVDPGKDIS-----K-
P.ultimum         VICSRLDLDPK----KFACRLAFH---------------------
S.parasitica      VICSRLDTTVSQ---SNVCRIAFYGPVVATLDNVLLCGPDCLVFI
T.trahens         IIGSRLDSDV----DGNVCRLAFSGSLVAPFDSDT------PWA-

cons                                                           


Query_Homo        ---------LKVYKLKHKHGLVERAMD-------DYSVIGRSLFK
B.hominis         ---------------------------------------------
C.merolae         --------------QQHQH--------------------------
C.muris           ---------------------------------------------
C.owczarzaki      ---------LKVFKRKSRTGTVERILD-------DYTLIGKGLFK
C.parvum          ---------------------------------------------
E.siliculosus     ---------LKLFTEKRKTGVVFRVTPNDQTGGGAVEVFGKDLFK
H.arabidopsidis   ---------VHRRVVNLGDIRIGRVKS-------GIDVIGRDMFS
N.gruberi         ---------LPVFKYKEKKAVVDRVVD-------ANTIIGKNLLT
P.pallidum        ---------LHIYKIKAKEGQIERIHS-------ESTLIGKNIFG
P.tricornutum     ---------LRLYTPKERRGTISRLGD-------PHKVFGSDLFK
P.ultimum         ---------------------------------------------
S.parasitica      RHYVHSCPXLHIGKIKERHGLVEKCGE-------HGVAIVKDLFR
T.trahens         ---------LKIFRVKAKVGHITRLKN-------EREAICKGLFX

cons                                                           


Query_Homo        KET-NIQLFVGLKVHL---S-TGELGIIDSAFGQSGKFKIHIPGG
B.hominis         ---------------------------------------------
C.merolae         --------------------------------------SILFPAA
C.muris           ---------------------------------------------
C.owczarzaki      KET-TLEPFLGLQVGL---S-SGEVGEIEGAFGQSGKFRVRMRQA
C.parvum          ---------------------------------------------
E.siliculosus     KET-NMPPFVGMLLLT---E-GGSVGHLESTFGKAGRFKARFPAG
H.arabidopsidis   KDV-RWSVYQGLAVLF---EKARVLGIILGPFGKTGKFR------
N.gruberi         SKTQSLQFFIGKKIDILIDDQPRFSGIIDSPFGQSGKFK------
P.pallidum        KDT-DLSKFIGMKVIF---D-NGVVGLLESGFGKTGKVKITLPAS
P.tricornutum     KET-NMKAFFGMKVQT---ER-NEIGEIKSSFGTSGKYRVFFPAG
P.ultimum         ---------------------------------------------
S.parasitica      KET-NLDIFKGLTVQN---ERSRALGAIDGAFGKTGKCRVQFT--
T.trahens         KGT-DPGVYTGLKVVS---AANGGIGVIQGRFGASNKMNVFFSGG

cons                                                           


Query_Homo        LSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLT
B.hominis         ---------------------------------------------
C.merolae         D--------------------------------------------
C.muris           ---------------------------------------------
C.owczarzaki      VSDATKATLAASDKPKGKGGRGLGKQRTAASARPKPWLHAMLPT-
C.parvum          ---------------------------------------------
E.siliculosus     TLVKPRPVVLEAIARRVRAERGEGSGNASSSRKSSQSPE------
H.arabidopsidis   ---------------------------------------------
N.gruberi         ---------------------------------------------
P.pallidum        VDINT----------------------------------------
P.tricornutum     TEAKEEINIKDRAGTKGRKVTGFSNSEEEAVELTEVVPYLLETLG
P.ultimum         ---------------------------------------------
S.parasitica      ---------------------------------------------
T.trahens         GQTDARA--------------------------------------

cons                                                           


Query_Homo        FKRYVFDTHKRMVQSP
B.hominis         ---------------V
C.merolae         ------------NDDI
C.muris           ---------------V
C.owczarzaki      ------------RFLR
C.parvum          ---------------V
E.siliculosus     ------------VVIS
H.arabidopsidis   ---------------I
N.gruberi         ---------------V
P.pallidum        -------------IKV
P.tricornutum     VFRWSLEKHVRKTPTP
P.ultimum         ---------------G
S.parasitica      --------------DG
T.trahens         -------------AVT

cons