T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:7 sec.
SCORE=85
*
BAD AVG GOOD
*
Query_Homo : 86
B.hominis : 88
C.merolae : 72
C.muris : 82
C.owczarzaki : 84
C.parvum : 77
E.siliculosus : 83
H.arabidopsidis : 86
N.gruberi : 87
P.pallidum : 87
P.tricornutum : 86
P.ultimum : 86
S.parasitica : 86
T.trahens : 86
cons : 85
Query_Homo MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER
B.hominis ------NINVGVMGHVDSGKTSLVKSLSAILSTASLDKNPQSRQR
C.merolae ---RFLNINVAVMGHVDVGKTTLVRFLSEILSTAALDKHPASREL
C.muris ---------------------------------------------
C.owczarzaki ---RVLNVNLGVLGHIDSGKTALAKALSTVASTAAFDKNPQSQAR
C.parvum ---RQATINLGTIGHVAHGKSTVVRAVSGVQTVRFK----DEKER
E.siliculosus -----LNINVGILGHVDSGKTSLVKALSTVLSTASLDKNPQSRER
H.arabidopsidis -----VNVNVGVLGHVDSGKTSLVRALSTHLSTAALDKSPQSQRR
N.gruberi ------------------GKTSLCKALSTHASTAAFDKSPQSKER
P.pallidum ---KPLNINIGIMGHVDSGKTSLAKALSTSLSTAALDKSPASQER
P.tricornutum -----LNVNLGVLGHVDSGKTSLVKALSTLLSTAALDKSKQSRQR
P.ultimum -----VNVNVGVLGHVDSGKTSLVRVLSTQLSTAALDKHPQSQQR
S.parasitica -----VNVNVGILGHVDSGKTSLVRSLSTHLSTAALDKNPQSKAR
T.trahens A-SRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVR
cons
Query_Homo GITLDLGFSCFSV--------PLPARLRS-SLPE--FQAA-----
B.hominis GITLDLGFSAFLS--------DIPSHISSXLSW------------
C.merolae GRTIDLGFSCTRL--------PASPVVVQ-LVDD--EA-------
C.muris ---------------------------------------------
C.owczarzaki GITLDLGFSSLSVT-------PMPEHLAG-NAAT--TSAL-----
C.parvum NITIKLGYANAKIYKCTNPNCPPPKCYRS-YGSN--KEDEPMCE-
E.siliculosus GITLDLGFSAFTV--------SLPEHLPH-LTGH--EVFA-----
H.arabidopsidis GITLDLGFSSFRL--------DIRK--------------------
N.gruberi GITQDLGFSAFYS--------DSPL--------------------
P.pallidum GITLDLGFSAFHS--------ELPDRLKS----------H-----
P.tricornutum GMTLDLGFSCFFL--------DMPSHLQ-----------------
P.ultimum GITLDLGFSAFRV--------PHEQLIKD----------------
S.parasitica GITLDLGFSSLQL--------PFTA--------------------
T.trahens GITLDLGFSALRV--------PLPPALAG-LRLDGHDDGT---PD
cons
Query_Homo ----------------------PEAEPEPGEPLLQVTLVDCPGHA
B.hominis ----------------------VIKIG-DKYKYIQYTLVDCPGHA
C.merolae -----------------------ASLENVSYEGLQLTWIDCPGHA
C.muris -------------------------------PRYEYTVIDAPGHR
C.owczarzaki ----------------------VQSVTDLAYDRLQFTLVDCPGHA
C.parvum ----------------------VPSCNHKMQLLRHVSFVDCPGHD
E.siliculosus ----------------------PPSTAAAFTRTLPTRQVDCPGHA
H.arabidopsidis ----------------------------GGPSFLQVTLVDCPGHT
N.gruberi ----------------------------SEYDRIQYTLVDCPGHA
P.pallidum ----------------------PDVIA-NNYNQIQYTLVDCPGHA
P.tricornutum -------------------------ASYPDKKNLQITLVDCPGHA
P.ultimum ------------------------GSAAIENTDIQITLVDCPGHA
S.parasitica --------------------------ASGEAYTAQLTLVDCPGHA
T.trahens ICSGTTSGNDTGDHPGKEDESGLLTVG-DKYDEIQFTLVDCPGHA
cons :*.***
Query_Homo SLIRTIIGGAQIIDLMMLVIDVTK-----GMQTQSAECLVIG-QI
B.hominis SLIRTILGGAQIIDMLIIVIDCLK-----GIQAQTAECIVIG-EI
C.merolae SLLRTVLLGASVMDLLLLVVDASA-----GIQAQTLECLALA-AI
C.muris DFIKNMITGTSQADVALLVVPADRFEGAFSKEGQTREHALLAFTL
C.owczarzaki DLIRTIIGGAQIIDMMMLVVDVNK-----GIQTQTAECLVIG-EI
C.parvum ILMSTMLNGAAVMDAALLLVAGNE--T--CPQPQTSEHLAAV-EI
E.siliculosus SLIRTIIGGAQIMDMMLLVVDATK-----GIQAQTTECVVIG-EA
H.arabidopsidis SLFQTVLGGAAIIDTVVLVTDCRK-----GLEAQTIESLLLA-SL
N.gruberi SLIRTIIGGAQIIDFMVLVIDAVK-----GVQTQTAECIVIG-EI
P.pallidum SLIKTIIGGSQIIDMMFLVIDITK-----GIQTQTAECIVIG-EI
P.tricornutum SLIRTIIGGAQIIDMVLLVVDAVK-----GWQAQTTECLVLA-EL
P.ultimum SLFKTILGGARIIDMVLLVVDAQK-----GLQPQTIESLLVA-EL
S.parasitica SLIKTVIGGAHIIDMALLVIDAVK-----GIQMQTIESTVLA-EI
T.trahens SLIKTIIGGASIIDIMVLVVDAKA-----GFQTQTAECLVIG-EL
cons :: .:: *: * .:: : *: *
Query_Homo AC---QKLVVVLNKIDLL-PE--GKRQAAIDKMTKKM-QKTLENT
B.hominis TT---NKAIIALNKIDLI-PE--AERSDRIKTVISSL-QKTLSKT
C.merolae FT---KHVVVALHKCDRV-RD--QP--AVLEERLQQL-QAYVSTN
C.muris GV---KQMIVGINKMDTC-D--Y--KQSRYDEIHNEV-EGYLKKV
C.owczarzaki MC---DILVVALNKIDQI-PE--DQRAQTIEKVTRGL-AKTFATT
C.parvum MKL--KHIIILQNKVELI-KE--AQAQEQ----YKQI-KDFVAGT
E.siliculosus VMSSGADVIVVLNKVDLI-PE--QERKARLRQAETEI-AAQLAGT
H.arabidopsidis VCP--RKLVIVLTKTDLL-SALDVERAAAIGAVTSEV-QTFVATH
N.gruberi SC---NNLIVALNKVDMI-PA--DQREDRVDKIKKSLIKNVFSQT
P.pallidum TC---KKAIVVLNKIDQL-PI--ESRQNKIDVMTNKL-KKVLEKT
P.tricornutum TS---PYLVVALNKADQF-PP--PERDQLLEQAAAKI-RDRLKAT
P.ultimum AVA--HHVVIALNKVDLLLPE--SEREVRIRSLETEI-QRVLDAK
S.parasitica AT---SHVIVVLNKVDLL-T--DK--ATQLPAMLATI-RTFLSSS
T.trahens TA---DTLMVALNKIDLF-PE--EKRASKVAKMTKRV-AATLKPT
cons :: * : : .
Query_Homo ----KF-RGAPIIPVAAKPGGPEAP-------ETEAPQGIPELIE
B.hominis ----RF-KNASIVWMCYVF--------------------------
C.merolae ----RWWLPTPLATIPTWIGT------------------------
C.muris --GYNI-EKIPFVAISGFVGDNMVEK-----SDKMPWYKGRTLVE
C.owczarzaki ----KF-GQVAVIPVAARPATGPA-------------IGVENLIQ
C.parvum ----SA-QDAPIIPISAVLK-----------------FNIDVLCE
E.siliculosus ----KL-SSASFVSCAAAVGGEKTA-------ASTPPAGIDTVAG
H.arabidopsidis FSSLKD-VTIPVVPVVVGTGH--------------KTEGIPHLLE
N.gruberi ----KF-KNPPIVSVCADPREE-SE-------SITKEQGLKNLIA
P.pallidum ----CF-KDSPYVAISANPSSSSDAAPASAAATGDNNIGVDRLIK
P.tricornutum ----RF-ANAPIVGVAACVGGEKLE-------VRNETYNMETLVQ
P.ultimum FPRLRG-QNVPIVAVAAAPADSA----------DEAKVGISTLVE
S.parasitica ---PTL-QDCPIVPVAAGDADGA-----------RAPQGMPDLLA
T.trahens ----AF-ANSDILPVSASSG-----------------DGLSDLVD
cons
Query_Homo L------LTSQISIPTRDP-SGPFLMSVDHCFSIKG--------Q
B.hominis ------------KIDSCIC-ATPLYFIYDHCFQLAG--------K
C.merolae ---------------------------------------------
C.muris A------L-DTMEPPKRPT-EKPLRLPLQDVYKIGG--------V
C.owczarzaki VVQVEAVLAKSVPRQRHDS-AAPFVFAVDHCFAIKG--------Q
C.parvum Y------ICTQIPIPIRDF-TSSPRMIIIRSFDVNKPGEDAQNMR
E.siliculosus E------LSRRARVPSRRA-SAPLYFAFDHCFSVRG--------Q
H.arabidopsidis V------LRTHLQAPERDT-SGDFRLAVDHCFAVPG--------H
N.gruberi E------FQKHVKISEKDE-NEPFLYMVDHCFTIKG--------K
P.pallidum E------LTNYVELPRRDD-QGPFLFEFDHCFQIKG--------Q
P.tricornutum T------LQDKLPPPKRTP-EGSFYFSVDHCFSIRG--------R
P.ultimum T------IRSHLYLPERNP-TGPFSLAIDHCFAIQG--------N
S.parasitica T------MQRHLHLPTRSG-DGPLCYAIDHCFPLRG--------K
T.trahens A------LTAAVRLPTRNEAEDAFLFAIDHCFQVKG--------Q
cons
Query_Homo GTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQ
B.hominis GCVMTGTVLSGSVSVNDEIEFPSLHLTRKVKSIQMFHKGIDKVLK
C.merolae ---------------------------------------------
C.muris GTVPVGRVETGIIKPGMNVTFAPVGITTEVKSVEMHHEQLSEAGP
C.owczarzaki GTVLTGTALSGQIQVNENIEIPTAKLSRKIKSIQMFHRPVQQITA
C.parvum GGVAGGSIIKGVLKIGDEIE-------------------------
E.siliculosus GTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKPVSIARA
H.arabidopsidis GTVLTGTVLSGALSKGSELELLPSGMKTTVKTLQVFRQDVERCVQ
N.gruberi GTIITGTVLQGSVSIGKTIQIPSIGEEKKVKSIQMFKTPVDKAIK
P.pallidum GSVMTGTVLRGSVEINQNIHIPQLNIEKKVKSMQMFHKPVKKASQ
P.tricornutum GTVLTGTVLNGAASVNDVLEFPTLGLDRKIKSIQMFKRQVQRIQQ
P.ultimum GTILTGTVLSGSVKVNDEVEIPSLQVVKKVKSMQMFKQSVTSATQ
S.parasitica GTVLTGTVLSGTVRVNDTIAIPILGTEKKVKSLQMFHTSVEKAIQ
T.trahens GTVVTGTIQRGSVAVGQTIEFPALGLSKKVKSMQMFKAPVERAVQ
cons
Query_Homo GDRLGICVTQFDPKLLERGLVCA-PESLHTVHAALISVEKIPYFR
B.hominis GDRAGIC--------------------------------------
C.merolae ---------------------------------------------
C.muris GDNVGFNVKNVSIKDIKRGY-------------------------
C.owczarzaki GDRAGICVTQFDASTLERGYACA-AGAVIFAHALIARVDKVRFFK
C.parvum ---------------------------------------------
E.siliculosus GDRVGMCVASLDAKLMERGVVTT-PGSVRPISAAIALVRKVPAFT
H.arabidopsidis GDRVGLRVNGLDPALVERALAVSPPGSLPAVTQVVIAVARVPLFQ
N.gruberi GDRIGIAVTKLDSKKLERGFACD-KGYIEIVDTILANASRIRFFK
P.pallidum GDRVGICVTQLDANLLERGLLCT-PKTVPLLNGAIVAIEKVRFYK
P.tricornutum GDRAGVCVSNLDAKLLERGIAAT-PGAVQLLKGAIALVRKVPYYV
P.ultimum GDRVAIRVNGLDASLVERGMAIT-PHSMPYVTQVVVPVHQIAFFQ
S.parasitica GDRVGLRLHGLDAATLERGLAIT-PKSLSFVLNLVLQVHRVRFFG
T.trahens GDRLGICVAQLNAKLLERGLACA-PGTIRAVSAAVVRVSRIPYFR
cons
Query_Homo G-PLQTKAKFHITVGHETVMGRLMFFSPAPDNF-DQEP-------
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki L-PVLSKSRFHVSMGHETVMGTASFFTRAAWPF-PFYSCV---VR
C.parvum ---------------------------------------------
E.siliculosus G-QCLSGAYCHVSLGHSTAMATATFFGASELKN-GLL--------
H.arabidopsidis GGACKSGAKCHATVGHATVIATATFFA------------------
N.gruberi K-EIKNSAKYHISIGHETVMGNVSLIARAKKEG-L----------
P.pallidum N-EVKTKSQFHVTIGHSTVIATAIFFGNKKQQT-EQQQQQ---PE
P.tricornutum G-TLHSGSKFHISVGHTTIMATVTFWGAVELL-VDTKPSKRYVGS
P.ultimum G-TCKSGAKFHATINHTTVVAIATFFSPMHGAKFTTKT-------
S.parasitica L-DCESGAKVHVTVGHSTVLAKATFFHGSHAS-FAVEN-------
T.trahens G-EIKSRAKFHLTVGHETVMATLQFFRSVGPGE-DPHGLASTASS
cons
Query_Homo ------------------ILDSFNFSQEY-LFQEQYLS----KDL
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki A------------SLDGEGNARFEVDKEY-AFAEELGR-------
C.parvum ---------------------------------------------
E.siliculosus --------------------GLFEHSADGLKALEALRDAGQGQDL
H.arabidopsidis ---------------------------------------------
N.gruberi ------------------SSNIFDTTVEY-SLLEELTE-------
P.pallidum T------------MIENMTLNQFNSKLEY-SYLDSL---------
P.tricornutum SS------LGGDADMAGLPRMTFSFEEEF-IHQDDLL--------
P.ultimum ---------------------QFEPLRLY-EYVAQIE--------
S.parasitica --------------------------TEY-RYLATLP--------
T.trahens SSAASSSDAASAADSAPHPAHVFSYDDEY-LDVSELEG-------
cons
Query_Homo TPAVTDNDEADK--KAGQATEGHCPRQQWALVEFEKPVTCPRLCL
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki --PPQEN--------ASNSGQPPAPLATFALIELDHPVACLSNAL
C.parvum ---------------------------------------------
E.siliculosus SLSSENSI-AGA--D-DEVCVDERPLLQYCHLTFHTPVITPPSSV
H.arabidopsidis ----------------------------FALLQFERAVFCPPATL
N.gruberi ------------------T--TYQEKDVFVKIEFEKPVCCYPNSN
P.pallidum ----------------NATGQEYPVGSQYALLTFEHPVLCPLNSV
P.tricornutum -----------------ESLDGQESLLHWALLDFQIPVHCPMDSL
P.ultimum -PIADANS-GGSDLKAVEEGKEIKSVSYFALLQFDQPVLCPRDAL
S.parasitica -------------------A--SATDHLFVLLQLEREILVPPFSH
T.trahens ------------------PEAYPTGSTTYAVLELESPVLCAPDAM
cons
Query_Homo VIGSRLDADI----HTNTCRLAFHGILLHGLEDRNY-ADSFLPR-
B.hominis ---------------------------------------------
C.merolae ----------------DARRTAFERH-------------------
C.muris ---------------------------------------------
C.owczarzaki LIGSRLDLDPD--VHTKACRLAFSGRVHEALTDKSY-RETFLPK-
C.parvum ---------------------------------------------
E.siliculosus VLGSRLDSTS----SSPNKTEAAHPT---ALDFG-----TQAGQ-
H.arabidopsidis VVCSRLDLDAK----RFSCRLAFYGTVECVVGSSSEEL-DMLSS-
N.gruberi YIASKLDTDI----NANMCRLAFNGKVIKMWNKSNVSKEQLVNS-
P.pallidum IIGSKLDVNL----DTSSCRIAFHGELVEGIDVTN--KQLLNNH-
P.tricornutum VIGSRLDTVDNSTGSASACRLAFSGRLMQSVDPGKDIS-----K-
P.ultimum VICSRLDLDPK----KFACRLAFH---------------------
S.parasitica VICSRLDTTVSQ---SNVCRIAFYGPVVATLDNVLLCGPDCLVFI
T.trahens IIGSRLDSDV----DGNVCRLAFSGSLVAPFDSDT------PWA-
cons
Query_Homo ---------LKVYKLKHKHGLVERAMD-------DYSVIGRSLFK
B.hominis ---------------------------------------------
C.merolae --------------QQHQH--------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------LKVFKRKSRTGTVERILD-------DYTLIGKGLFK
C.parvum ---------------------------------------------
E.siliculosus ---------LKLFTEKRKTGVVFRVTPNDQTGGGAVEVFGKDLFK
H.arabidopsidis ---------VHRRVVNLGDIRIGRVKS-------GIDVIGRDMFS
N.gruberi ---------LPVFKYKEKKAVVDRVVD-------ANTIIGKNLLT
P.pallidum ---------LHIYKIKAKEGQIERIHS-------ESTLIGKNIFG
P.tricornutum ---------LRLYTPKERRGTISRLGD-------PHKVFGSDLFK
P.ultimum ---------------------------------------------
S.parasitica RHYVHSCPXLHIGKIKERHGLVEKCGE-------HGVAIVKDLFR
T.trahens ---------LKIFRVKAKVGHITRLKN-------EREAICKGLFX
cons
Query_Homo KET-NIQLFVGLKVHL---S-TGELGIIDSAFGQSGKFKIHIPGG
B.hominis ---------------------------------------------
C.merolae --------------------------------------SILFPAA
C.muris ---------------------------------------------
C.owczarzaki KET-TLEPFLGLQVGL---S-SGEVGEIEGAFGQSGKFRVRMRQA
C.parvum ---------------------------------------------
E.siliculosus KET-NMPPFVGMLLLT---E-GGSVGHLESTFGKAGRFKARFPAG
H.arabidopsidis KDV-RWSVYQGLAVLF---EKARVLGIILGPFGKTGKFR------
N.gruberi SKTQSLQFFIGKKIDILIDDQPRFSGIIDSPFGQSGKFK------
P.pallidum KDT-DLSKFIGMKVIF---D-NGVVGLLESGFGKTGKVKITLPAS
P.tricornutum KET-NMKAFFGMKVQT---ER-NEIGEIKSSFGTSGKYRVFFPAG
P.ultimum ---------------------------------------------
S.parasitica KET-NLDIFKGLTVQN---ERSRALGAIDGAFGKTGKCRVQFT--
T.trahens KGT-DPGVYTGLKVVS---AANGGIGVIQGRFGASNKMNVFFSGG
cons
Query_Homo LSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLT
B.hominis ---------------------------------------------
C.merolae D--------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki VSDATKATLAASDKPKGKGGRGLGKQRTAASARPKPWLHAMLPT-
C.parvum ---------------------------------------------
E.siliculosus TLVKPRPVVLEAIARRVRAERGEGSGNASSSRKSSQSPE------
H.arabidopsidis ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum VDINT----------------------------------------
P.tricornutum TEAKEEINIKDRAGTKGRKVTGFSNSEEEAVELTEVVPYLLETLG
P.ultimum ---------------------------------------------
S.parasitica ---------------------------------------------
T.trahens GQTDARA--------------------------------------
cons
Query_Homo FKRYVFDTHKRMVQSP
B.hominis ---------------V
C.merolae ------------NDDI
C.muris ---------------V
C.owczarzaki ------------RFLR
C.parvum ---------------V
E.siliculosus ------------VVIS
H.arabidopsidis ---------------I
N.gruberi ---------------V
P.pallidum -------------IKV
P.tricornutum VFRWSLEKHVRKTPTP
P.ultimum ---------------G
S.parasitica --------------DG
T.trahens -------------AVT
cons