T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:6 sec.
SCORE=93
*
BAD AVG GOOD
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Query_C.owczarz : 95
A.taiwanensis : 94
B.hominis : 95
C.merolae : 95
C.owczarzaki : 95
E.siliculosus : 95
H.arabidopsidis : 93
N.gruberi : 93
P.pallidum : 95
P.tricornutum : 94
P.ultimum : 95
S.parasitica : 81
T.trahens : 95
cons : 93
Query_C.owczarz MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQRKWPE
A.taiwanensis ---------------------------------------QRRVPD
B.hominis -----------------TYVNQGRDAIKRRENLVKDLLTHRKIPE
C.merolae -------------LADPAYVTVAEAARRSRTALFRQLLTQRRLLP
C.owczarzaki MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQRKWPE
E.siliculosus -------------LVKTSYINQGEQALNGRRKQVTALLSNRRLPT
H.arabidopsidis ---------------------------------------------
N.gruberi ------------------HVKQALQAVNKQQKMYKTLLSQRQLPK
P.pallidum ---------------KQSYVDQATQAISQYNSLINNLLSHRKLPD
P.tricornutum ---------------------------------LRTLLVNRRLPE
P.ultimum -----------------TYVEQGLAAIRNREQLFTALLSQRRVPD
S.parasitica MQSSVNQKLATD-FVDAAYIRQGSDALKSHEKKLTALLAQRKLPE
T.trahens ---EGNLKLAQE-FLPEEYVRQGGVSLGGRARAVRSLLSQRQLPR
cons
Query_C.owczarz LGWDEMSIELLLSDLAQMDSNNFPANIGAGEREARVYSDLVARRH
A.taiwanensis EPWDELSITLLLQELAGMDMNNACRVAGAGEREGRIFSPLVYRRH
B.hominis IGWDDQSIELFLNDLSLMDSNNFLGNSGVGEREGRIAST-VAKRH
C.merolae QGLDEHTVRLLVDELAGLDANQFIDQANVGEREGRIYSELVRARH
C.owczarzaki LGWDEMSIELLLSDLAQMDSNNFPANIGAGEREARVYSDLVARRH
E.siliculosus RGWDDAQIEYLLTEISLMDSNNFSENVGVGEREGRVYSGLVARRN
H.arabidopsidis ---------------------------------------------
N.gruberi EGFSDQQIESLLSFFASMDTNNYENHIGIGEREGRVFSKLVEKRH
P.pallidum VGWDDNVIEWFINEISMMDSNNFIENIGVGEREGRLYSQIVARRH
P.tricornutum HGWSDVQIQHVLYTMATLDTNNKRSWCGVGEREGRVYSALVSSRH
P.ultimum DGWDEQTVELVLQSLAAMDSNNFRTNIGAGEREARVFSSLVAKRH
S.parasitica DGWDDLSIQVLLNDLAQMDSNNFAHNAGAGEREARVASSLVRNRC
T.trahens QGWNEASISAFLDELATMDSNNFADRAGVGEREARVFSPLVARRH
cons
Query_C.owczarz FRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRL-AGVH
A.taiwanensis FGMSHGIGRSGDIMALQPKAAGSSLINILSQYLVLDIIRE-AGIK
B.hominis FYLAHGIGRAGDVAAIQ-KAAGSSLICELTRKMAVDFIQT-CGIT
C.merolae FGMAHGMGRAGDLAASQPKACGASILVRLCAALLLDALHV-AGFR
C.owczarzaki FRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRL-AGVH
E.siliculosus FRLSHGVGRSGDIAEVQPKAAGSSLLAKLTHALAKDALRL-AGLG
H.arabidopsidis ------------------KAAGSSLLVQLANALAKDVLRL-AGLR
N.gruberi FYLSHGIGRSGELTSNQPKAAGSSIILQLCNYLVNHAIQL-AGCK
P.pallidum FGLAHGIGRSGDINEQQPKAAGSSLIQKLTNYLVLDALRI-AGLE
P.tricornutum FGLSHGVGRSGDIAEPQPKALGSTVLAKLTLCLVLDAVRRGSGLH
P.ultimum FHLCHGVGRSGDVAAVQPKAAGSSLIVQLTNALAKDLLRE-AGLR
S.parasitica FHLAHGVGRSGDICAVQPKAAGSSLLVQLTNCLVLDMLHL-AGIK
T.trahens FGLGHGVGRSGELAAVQPKAAGSSLMYKLANALVLHALRL-AGMR
cons ** *:::: * : . :: .*
Query_C.owczarz ---AANACIALPLATGMAMVMTLLTLAQ--T----RPPSARKVLW
A.taiwanensis ---SAAGCLVLPMATGMTLHFCLSQFHQ-----------GSDILW
B.hominis ---EVKDCIVLPLATGMSISMCLLSLRL--N----N-PTAKYVIW
C.merolae ---SCRRVALLPIATGMAMTLCLLALRW--Q----R-PAADRVLW
C.owczarzaki ---AANACIALPLATGMAMVMTLLTLAQ--T----RPPSARKVLW
E.siliculosus ---NARACLVLPMATGMSLALTFAALRA--A----K-PAAKTIVW
H.arabidopsidis ---AVQAXLVLPVATGMSLXLVLLQLKK--T----RP-AARYVIW
N.gruberi ---NVKKSIVVPMCTGMTLALCLRSLANSLE----Q-PNKKYVIW
P.pallidum --KSIDACLVLPMATGMTIALTLMTMRQ--T----K-PKATYVLW
P.tricornutum PQTAAKSGILLPLCTGMSMALVLGTLRQL-Q----EP-YRNIVLW
P.ultimum ---SITSALVLPVATGMSLTLVLLTLRA--Q----KP-DAKYVIW
S.parasitica ---NAKSAIVLPVATGMALLFAMLTLQAQ-ARVPGRPHTKRYVLW
T.trahens ---VAKKAIIVPTATGMALVLCLLALCA--Q----DEHARRYVIW
cons :* .***:: : : : ::*
Query_C.owczarz LRIDQKSCIKAITACGFEVVVVDNAI---EGD-EV-----RTDLS
A.taiwanensis SRIDQKSCFKAMLLTGAKPKIMPVKQ---NGD-AL-----QTDVD
B.hominis FRVDQKTCLKSILTTGLEPIIIDPVP---EGD-EL-----NTNLG
C.merolae IRIDQKACLKCIRAAGYQIDVLENKL---DGD-QV-----VTDME
C.owczarzaki LRIDQKSCIKAITACGFEVVVVDNAI---EGD-EV-----RTDLS
E.siliculosus PRMDQKSCLKAIVAAGFTPIVVENLI---QGD-AV-----ATDVD
H.arabidopsidis PRVDQKSCFKAILAAGLTPLVLANCLV--VAD-EVCGGYXKTDLV
N.gruberi PRIDQQSVLKSIDTAGFTPIVIENVL---NEDGSI-----EANLQ
P.pallidum PRIDQKSCLKSIVTASLTPIVIENQL---IDD-VI-----TTNLQ
P.tricornutum SRIDQKSCFKAIQSAGLECVVVPTRL---AGD-AV-----VTDLD
P.ultimum PRIDQKSCFKSILTAGLTPLVLENTLS-EDGD-QL-----RTDMD
S.parasitica PRIAKSHASSPWSPPASSPLSRTSWT---ATS-CA-----RT-SQ
T.trahens PRIDQKTAFKAILTAGLTPLVVEPRKCPRGSD-AL-----VTDVD
cons *: :. . . . :
Query_C.owczarz ALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESIP
A.taiwanensis AIRNALIAGGKDNIRCVITTTSTFAPREPDDVVAVAK--------
B.hominis ALREKLESIKREEILCIIPTTSVFAPRLPDDIVGVSKLAKEFSVP
C.merolae ALEKRLAASDPSRYAAVISTTSCFAPRAPDRVVAIAQLCARYGIP
C.owczarzaki ALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESIP
E.siliculosus GVRAAVESCGAENVLCVVTTTSCFAPRLPDKVDEVARICAASGVG
H.arabidopsidis GMAALMDQYGSESILAVSSTTSCFAPRAYDAVKEIAQLCQERNIA
N.gruberi SIESKIQQVGAENILCVLSTTSCFAPRVPDDVFEIGKICFKYGIG
P.pallidum TIEETIKSLGAENILCVMSTTSCFAPRIPDKIIEISELCKKYDVG
P.tricornutum AFQASLLTYG-DRVLAVVTTTSCFAPRVPDQVDAVARLCAEQCVP
P.ultimum GLQRLIDAHRSGDVLAVLSTTSCFAPRGYDDVEAIARVCQTHDIA
S.parasitica RLKPRCANSGPRT------FCACSRPRAALR--RAATTASTRSRS
T.trahens GVRAAIESVGADNVLCILSTTSCFAPRTPDKVVALAELASEYGIG
cons . : ** .
Query_C.owczarz HVINNAYGIQSSKITALIQDAH-------KA--GRVDAFVQSSDK
A.taiwanensis ---------------------------------------------
B.hominis VIVNNAYGLQSGATCKAIDRAI-------RV--GRIDMLVSSTDK
C.merolae HLINHAYGVQSRRCNGLVCAAC-------RL--GRVDAVIFSFDK
C.owczarzaki HVINNAYGIQSSKITALIQDAH-------KA--GRVDAFVQSSDK
E.siliculosus HVINNAYGVQCSKTCRLVNRAM-------AV--GRVDAVVQSTDK
H.arabidopsidis HVINNAYGVQASACVHQIDLAM-------RI--GRVDAVVQSLDK
N.gruberi QVVNNAYGVQSKIIMERINKTI-------ASSKSTITCFVQSTDK
P.pallidum HVINNAYGLQCTKITHQISQSV-------RL--GRVDYVVQSTDK
P.tricornutum HVINNAYGLQSSDTSKLLNRAC-------AV--GRVDAIVCSTDK
P.ultimum HVINNAYGVQASKCTHVVNQAM-------RV--GRVDAIVQSLDK
S.parasitica SAGNTILGTSSTMPTDSSRPSARTSIKHFGS--GASTRASRARTR
T.trahens HVVNNAYGVQSRRCMGLLNEAA-------RV--GRLDAFVQSTDK
cons
Query_C.owczarz NLMVPVGGALVAG-HDRAFIKRIGEMYPGRASAAPSVDIFITLLS
A.taiwanensis ---------------------------------------------
B.hominis NMLVPVGGALVYS-PQSGMVDLVRKNYPGRASMSPILDVFITLLS
C.merolae NFMVPVGGAGVAG-TSPTFIEAVESLYPGRASVAPVVDLFITLLQ
C.owczarzaki NLMVPVGGALVAG-HDRAFIKRIGEMYPGRASAAPSVDIFITLLS
E.siliculosus NFLVPVGGAVVCG-PDATFIEQVGKSYAGRASSGPCLDLFITLLS
H.arabidopsidis NFLVPVGGAIVCS-TSSEIVDSVAKFYPGRASATPALDFFITMLQ
N.gruberi NFMVPVGGAVVSSGSDITFIDKVSKIYAGRASMTPILDLFITLLS
P.pallidum NFMVPVGGAIVAS-PLAENIDRLAKNYPGRASGAPILDLFITLLS
P.tricornutum NFMVPIGGAIVLS-PDESLIQNVGKVYAGRASASPMLDLFITLCS
P.ultimum NFMVPVGGAIVCA-PSAEMVASVSKCYPGRAAITPTLDFFITMLQ
S.parasitica TFSCPSVAPSSQS--PQAFVQAIGKMYPGRASNAPALDLFITMLH
T.trahens NFMVPVGGAVVAS-ANKAFVDAVSLLYPGRASAAPIVDLFITLLA
cons
Query_C.owczarz MGQQGFRSLLKQRKVVFEQLRAKLGAFAVSQG-ERL----LETPH
A.taiwanensis ---------------------------------------------
B.hominis MGKRELRSVLKEREDCYQYLLDRLGEVAGRYK-QRV----LRTPR
C.merolae LGRDGFSGLLRERERRFQRFQAQLAPVLAKHG-ERL----LHTPD
C.owczarzaki MGQQGFRSLLKQRKVVFEQLRAKLGAFAVSQG-ERL----LETPH
E.siliculosus MGQEGWRRLLAERETLVEPFRRRLREVAESNG-ERL----LESSG
H.arabidopsidis MGKNGYRRLLEERKHLAAYMREKLEVLAAEEG-EHV----LKVST
N.gruberi MGKDGWEKLLAEREVLFQHFVSEIESKLTNTQ-SKFSLIRGSLQR
P.pallidum MGRAGYRRLLDERKQLLPYFIDEMSKVVKEVGVGRI----LNTQA
P.tricornutum MGLRGYQQLLTSRRILLPTFTERLKEVANKYG-ERV----LECRT
P.ultimum MGRKGYRQLLQERKTLAKYLQEQLQIVAHEVG-ERV----LHVPF
S.parasitica LGRRGYKALLDERKRLVPYFSAALTSVATAHG-ERV----LVTRH
T.trahens MGEEGWTELLASRADVFGYAQAELAQVAERTG-LRL----LDVRG
cons
Query_C.owczarz NPISLAITLSTFGS----------DATRLGSFLFTRCVSGTRVVA
A.taiwanensis ---------------------------------------------
B.hominis NPISIAVTLEYSDE----------DITKFGAMLYTRGVSGSRCVG
C.merolae NPISFAISLEHTMLE------GGIEPTAIGSMLYARRCSGPRAVL
C.owczarzaki NPISLAITLSTFGS----------DATRLGSFLFTRCVSGTRVVA
E.siliculosus NTISFAVTLDSLVR----------KAAFFGSMLFTRCVSGTRVVP
H.arabidopsidis NEISYAMTLATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGARVVS
N.gruberi NQISFALSIDLP----------KEEALKVGVSLFYRNCTGPRVVL
P.pallidum NTISFGIAIDS--N----------DISMIGSKLFMRSCSGARVID
P.tricornutum NCISFGVTLTSVS----------RDVSSLGAMLFQRCVSGTRVVP
P.ultimum NEVLLASDARTKA----------QELTFFGAMLFSRGVSGTRYVS
S.parasitica NDISFCLTLSHVG---------GNDATFLGSMLFSRGVSGTRVVT
T.trahens NDISMALSLDALSSECG---GDDDAVTMLGSMLFVRSVSGARVVV
cons
Query_C.owczarz ADRAAATTS-VGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVD
A.taiwanensis ---------------------------------------------
B.hominis FH---NKKS-VGKYEFANYGGHTDHYPHAYFTSAAAIGVKKEEID
C.merolae GT---ERRL-VQGVLLAGYGAHIADYPVPYLNLAAAIGIRDIDIE
C.owczarzaki ADRAAATTS-VGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVD
E.siliculosus R---EQHKC-VGGIDFNGYGASVTGYPHDYLTAACAAGLSTEELD
H.arabidopsidis CL---DSKC-IAGYEFDSFGAHYDEFPVAYVTFACVLGMQKTEVD
N.gruberi KG---SSKTVLPHLSFVGYGSHTDSYPHHYITLACAIGIEKEEIE
P.pallidum VQS-GQKKS-VGNIDFKNYGSHIDNYPTSYLTVACAIGITKEDID
P.tricornutum RG---TVQR-MGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGD
P.ultimum ATPCAIPST-IGGYTFESYGAHSDHFPAPYLTVACAIGMTKDEVD
S.parasitica GT---SRAT-IVGHAFEGFGAHSATYPTAYLSAACAIGMTQDVRD
T.trahens PS---KTKT-IGPVTFAHYGSHSSASSEPYVNVAAAIGMTSTDID
cons
Query_C.owczarz ALIDRLTAA-FKDL-------------------------------
A.taiwanensis ---------------------------------------------
B.hominis VFIDRLEKN------------------------------------
C.merolae RFCRRLDEV-LGQ--------------------------------
C.owczarzaki ALIDRLTAA-FKDL-------------------------------
E.siliculosus EFLIRLDKA-LRK--------------------------------
H.arabidopsidis MLMTKLRKT-IHDW-------------------------------
N.gruberi SFLTL----------------------------------------
P.pallidum LFSKR----------------------------------------
P.tricornutum DFFTRLPSRNIVLWSWIDQKSCFKAIQSAGLECVVVPTRLEGDAV
P.ultimum ALVVKLRKT-IHEW-------------------------------
S.parasitica S--------------------------------------------
T.trahens RFVVRFEKT-LAAW-------------------------------
cons
Query_C.owczarz ----------------------------------------RAAMN
A.taiwanensis ---------------------------------------------
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.owczarzaki ----------------------------------------RAAMN
E.siliculosus --------------------------------------------A
H.arabidopsidis ----------------------------------------RK--K
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum VTDLDAFQAFLLAYGDRVLAVVTTTSCFAPQVPDQVDAVARL-CA
P.ultimum ----------------------------------------RT-KH
S.parasitica ---------------------------------------------
T.trahens ----------------------------------------RKAHA
cons
Query_C.owczarz QP
A.taiwanensis -V
B.hominis WK
C.merolae VR
C.owczarzaki QP
E.siliculosus KA
H.arabidopsidis QN
N.gruberi -L
P.pallidum -L
P.tricornutum EQ
P.ultimum NR
S.parasitica -I
T.trahens SP
cons