T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=71
*
 BAD AVG GOOD
*
Query_Mus      :  74
N.gruberi      :  80
P.pallidum     :  74
P.ultimum      :  77
S.parasitica   :  52
cons           :  71

Query_Mus      MKTAAARGATRRDGQPKLGLCVLCGLPAAGKSTFARALALRLRRERGW
N.gruberi      ------------------------------------------------
P.pallidum     ------------------------------------------------
P.ultimum      ------------------------------------------------
S.parasitica   ------------------------------------------------

cons                                                           


Query_Mus      AVGVLSYDDVLPLALPDCDGTQPRPSQWKMFRQELLKHLECFLVAVIS
N.gruberi      ------------------------------------------------
P.pallidum     ------------------------------------------------
P.ultimum      ------------------------------------------------
S.parasitica   ------------------------------------------------

cons                                                           


Query_Mus      GAQMSAPPNRTEAVWEDFITCLKSQDLMIFPTALEAQPCHLLAKPAVS
N.gruberi      ------------------------------------------------
P.pallidum     ------------------------------------------------
P.ultimum      -------------------------------TATTVTPAGSVSVSEEE
S.parasitica   ------------------------------------------------

cons                                                           


Query_Mus      RPLFLVLDDNFYYQSMRYEVYQLA------------------------
N.gruberi      ---IIILDDNFYYKSMRHEFVQIC------------------------
P.pallidum     ---IILLDDNFYYKSMRYIYYKIA------------------------
P.ultimum      RILVLLVDDNFQYRSQRKRFCQLA------------------------
S.parasitica   ----LLLDDNMYYRSMRKKSCSCVDSEMQALVFTWTRSPTFAAPAMPH

cons               :::***: *:* *    .                          


Query_Mus      --RKYSLGFC--QLFLDCPLETCLKRNGERS--QPLPDETIQLMG---
N.gruberi      --QEFTIAHI--QIILKCNVETCIERDAKRS--QPVGEDIIRSMN---
P.pallidum     --KQYNTGFT--QLFLYKDLYLSKLNNKLRL--QQVTDDVIDKMN---
P.ultimum      --CEVDCGFG--ILHVDTPVALCRQRNAARDGVARVPDAVFERMV---
S.parasitica   GSRRFRTSFAECTLSSSHQVQACIRGKPDRS--SSTAPPTQLHFTLRS

cons              .   ..    :     :  .   .  *             :    


Query_Mus      ------RKIEKPNPEKNAWEHNSLIIQ-SSACSLEASLEVTGLLLTAL
N.gruberi      ------IRF---------------------------------------
P.pallidum     ------QIFEDPNPQSHKWELNTVVIP-TINSSN-HNSSVSMLLFTYL
P.ultimum      ------SVFEAPDGDQHAWNSSS-------------------------
S.parasitica   RSRRRWRHLKSTQPKKSSLKRNAAGRRPSPACFTERTSSCA----SSW

cons                   :                                       


Query_Mus      ENPIKCVEDNTEQKETDRIICSTNILHKADETLRRTVSQTMREAKDE
N.gruberi      ----------------------------------------------E
P.pallidum     KLSL---------------------------------------IFIE
P.ultimum      ---------------------------------------------TI
S.parasitica   DRSF---------------------------------------GMPR

cons