T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=62
*
 BAD AVG GOOD
*
E.huxley_query    :  50
B.hominis         :  68
C.merolae         :  67
C.owczarzaki      :  57
E.siliculosus     :  50
H.arabidopsidos   :  64
N.gruberi         :  51
P.pallidum        :  67
P.ultimum         :  72
P.tricornutum     :  53
S.parasitica      :  68
T.trahens         :  64
cons              :  62

E.huxley_query    MALR-----------------SLTLLCAAAGASAGAIELTPDNFD
B.hominis         AL-----------------------VFAEFTENDGVLVLNDDNFD
C.merolae         RS---------------------AAVLAAKSGASASVSLNEKTFD
C.owczarzaki      RS--------------------VTAFCASAGGKQAVVELTDANFA
E.siliculosus     ----------------------------------AVVDLTENNFK
H.arabidopsidos   ---------------------------------------------
N.gruberi         F----------------------ALFVQADGSSGVVLELNTQNFE
P.pallidum        I----------------------ALCVAFVAADGNVVVLSPDNFD
P.ultimum         AAVASASDVVVLTPDNFDQVSFAAAALAAVASASDVVVLTPDNFD
P.tricornutum     AI---------------------TLAFAASVSAYDVPSLTPDNYE
S.parasitica      A---------------------LAAMAVTAVMASDVVVLTPENFD
T.trahens         AIV------------------VLALCALPLLASAGGVTLTPDNFD

cons                                                           


E.huxley_query    ELV--LKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDS-KKV
B.hominis         QAIA-E--HESLLVKFYAPWCGHCKKLAPDYSAAARELRELDPPL
C.merolae         KQIN---AHRIALVKFIAPWCGHCKRMKEDWDAAAVDLSGQ-KDL
C.owczarzaki      ELV--LNSQDVWLVEFFAPWCGHCKNLAPIWEAAAKKLDGK-V--
E.siliculosus     EMV--LDSDEMWLVEFFAPWCGHCKKLEPEWESAAGQLSGS-VNI
H.arabidopsidos   ----------ALLVEFYAPWCGHCKQLAFDYAAAATSLKKKNLPV
N.gruberi         TTIQ-SNPQKVFFIKFFAPWCGHCKRLAGTWSELAKELEDSS-VP
P.pallidum        TVV---DGTKTVFVKFYAPWCGHCKKLAPDYEVIADTFAGS-KQV
P.ultimum         QVV---DGSKNVLVEFYAPWCGHCKNLAPIYEVVATSFKKE-SSV
P.tricornutum     SVT--E--GKTVFIKFFAPWCGHCKKMAPDWEKLAEEWDGHA-VG
S.parasitica      EVIDVIDGSKNVLVEFYAPWCGHCKQLAPTWETVATSFKNV-DDV
T.trahens         SVL---DGSKHVFVEFFAPWCGHCKNLAPEWEKLGETFARHSSEV

cons                          :::* *** ****.:   :   .          


E.huxley_query    LIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSL
B.hominis         YLAEVDATAA-PKLSQRFAIRGYPTLKFFKNG--NAVDYDSGRSK
C.merolae         LVAEVDATVE-TKLRDRFEIRGFPTIKLFVNGK-PVADYNGERTK
C.owczarzaki      KVGALDATVH-SSTAGRYNIKGYPTIKVFGADKANPSDYQGGRSE
E.siliculosus     KLFTIECL-------------------------------------
H.arabidopsidos   RLAKVDATVE-TKLAEQFAIRGFPTLKFFKGDVNAVKDFDGGRTA
N.gruberi         HFQNVQLAKGG--------------------K--PVTEYYGYRTV
P.pallidum        VIAKLDCDVH-KELCGKYDVSGYPTLKVFAKSK-EAKDYNGMRSI
P.ultimum         VVAKVDADEH-KELGSNYGVSGFPTLKFFPKGSIDPEDYKGGRTE
P.tricornutum     LIAEVDCTTEGKPLCDANGVRGFPTLKYGDPA--GLEDYQGSRSF
S.parasitica      VVAKIDADEH-RDLGEKFEVTGFPTLKFWNKGAKYPDTYTSGRGE
T.trahens         VIAAVDADAH-RELGSRFGVSGFPTLKFFPKGSTEPEDYSGGRTA

cons               .  ::                                       


E.huxley_query    DELKKFAENELGPGC-------SV--------DLMDNCSEEQKGK
B.hominis         ADIVNYMKRKAGPS---------------FEE----VVLDPKKNV
C.merolae         DALVNFVRRQMTPPV-------VV----TWDQ----IVMDPEKDV
C.owczarzaki      NDIV-----------------------------------------
E.siliculosus     ---------------------------------------------
H.arabidopsidos   AEIEKWVVRKSGP---------------DFQE----RVIDNEKDV
N.gruberi         PKF------------------------------------------
P.pallidum        EEIVTFVNNAAGTNVRVAPSNVIDLTPENFDA----EVLNKDKDV
P.ultimum         DDIAKFLNEKAGSN-----------------------VIHSKKHA
P.tricornutum     DDLATFAKENLKPV---------------CSPANL-DLCDDEKKK
S.parasitica      DE------------------------------------LDPTKHV
T.trahens         EDLVAFVNSKTGTAV-------VELNQDNFDD----VVLNEDAFV

cons                                                           


E.huxley_query    -LKEYIDMAPEKRTE-MLETLKKELADAES-THEALLKELQATYK
B.hominis         FVKFYAPWCG--HCKA-LAPTYEKLAEAYKDDADVVIAEMDATAN
C.merolae         FVEQYAPWCG--HCRN-LEPAYEELARKLAPVKTVVIAKMDATKN
C.owczarzaki      ---------------------------------------------
E.siliculosus     ---------------------------------------------
H.arabidopsidos   LLEFYAPWCG--HCKA-LAPKYEELGEAFADVDSIMIAKIDAAAN
N.gruberi         ---------------------------------------------
P.pallidum        LVEFYAPWCG--HCKK-LAPDYEILANTYAGDKHVGIAKVDCDSH
P.ultimum         LVEFYAPWCG--HCKS-LAPTYEEVGKIFSGEENVLIAKVDATAH
P.tricornutum     QIEDYMALSDD-DLESKIKAEEEKLEAAEA-EFKEAVTKLQADYQ
S.parasitica      LVEFYAPWCG--HCKQ-LTPTWESLANIYAGEENVVIAKVDATAT
T.trahens         LVEFFAPWCG--HCKA-LAPEWEKVAKAFANEPNCVVAALDADKH

cons                                                           


E.huxley_query    ESM-D---KLEKLKEESAPKIKLLKAATPA---------------
B.hominis         E--------VAGLNIRGFPTLKFYKAGEPTAPVDYEGERTLEALT
C.merolae         D-------APGEYKARGFPTLLFFPAGSTKKSIRYEGDRSVADML
C.owczarzaki      ---------------------------------------------
E.siliculosus     ---------------------------------------------
H.arabidopsidos   E------VDHAGVEVQGFPTILFFPAMDKQNPIVYEGSRDVDGFT
N.gruberi         ---------------------------------------------
P.pallidum        K------ELCSKYDIKGFPTLKWFPKDNK-EGEKYEQGRELETFI
P.ultimum         A------DLASRYGVNGYPTIKYFAPGSD-DPEDYSGGRDKDSFI
P.tricornutum     KLSEDKDEKIAAVKNSGLGLLKSVKA-------------------
S.parasitica      G------DLASKFGVSGYPTIKYFGTGAS-EAEDYGFGRELQEFV
T.trahens         R------EIGSKYDVSGFPTIKAFAKDDKSGEEKYTGGRTADDIV

cons                                                           


E.huxley_query    ---------------------------------------------
B.hominis         DFVEKNRV------------------------------------A
C.merolae         SFIQEAAD------------------------------------S
C.owczarzaki      QAA------------------------------------------
E.siliculosus     ---------------------------------------------
H.arabidopsidos   EFGTGGSLDDRAASVEVGVPKEEHEKVLLELSGLRETLGKTQSAL
N.gruberi         ---------------------------------------------
P.pallidum        TFINKNAG------------------------------------T
P.ultimum         DFINENA--------------------------------------
P.tricornutum     ---------------------------------------------
S.parasitica      DFVNEKAG------------------------------------G
T.trahens         EYLNTQLA------------------------------------A

cons                                                           


E.huxley_query    ---------------------------------------------
B.hominis         GTQVFAFANHSAD--------------------------------
C.merolae         CTEYAFC--------------------------------------
C.owczarzaki      ---------------------------------------------
E.siliculosus     ---------------------------------------------
H.arabidopsidos   DATQARV--------------------------------------
N.gruberi         ---------------------------------------------
P.pallidum        HRVKEEDESSSDEEKSYMRSLKEPTTAKSSEKLTSFSKKLADGPS
P.ultimum         ---------------------------------------------
P.tricornutum     ---------------------------------------------
S.parasitica      R--D-----------------------------------------
T.trahens         DCLQQTLEGLTVERVAQRAELV-----------------------

cons                                                           


E.huxley_query    -----------------------------------PKAEGAKDEV
B.hominis         ---------------HRGR---FPRFHQPIA------SKRSSALQ
C.merolae         ------RAMSIGRV--------------------SPEKRRSFHRT
C.owczarzaki      -----------------------------------------LERL
E.siliculosus     ------------------------------------------KGG
H.arabidopsidos   ------QALESGHNRMEAQLDFLIQMQQPMARTTSAAQGPPSSRG
N.gruberi         ------------------------------------------KSF
P.pallidum        LADFINDNTEETYVESYDQLQKKKKSKQLLLKNK---KSKIGLPK
P.ultimum         -------------------------------------------GV
P.tricornutum     -----------------------------SK------SKTAKEEL
S.parasitica      -------------------------------------RLDDSSED
T.trahens         -----------------E--QAPERPHIVLV------RVRHATAD

cons