TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
         (223 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    99   4e-21
gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    87   1e-17
gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    76   3e-14
gb|GL376569.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    44   4e-11
gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    63   2e-10
gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    54   9e-08
gb|GL376594.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    50   2e-06
gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    48   8e-06

>gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582036,
              whole genome shotgun sequence
          Length = 1090657

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 47/117 (40%), Positives = 72/117 (61%)
 Frame = -1

Query: 11     AAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKV 70
              AA  +++  + LTPDNFD++V    K   ++F APW GHCK + P ++ +A++F+    V
Sbjct: 126127 AAVASASDVVVLTPDNFDQVV-DGSKNVLVEFYAPWCGHCKNLAPIYEVVATSFKKESSV 125951

Query: 71     LIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELG 127
              ++A VD     K L   YGV G+PT+K+F     + EDYKGGR+ D++ KF   + G
Sbjct: 125950 VVAKVDADE-HKELGSNYGVSGFPTLKFFPKGSIDPEDYKGGRTEDDIAKFLNEKAG 125783



 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 46/106 (43%), Positives = 58/106 (54%)
 Frame = -1

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
              L   +FD  V+ S K A ++F APW GHCK + P ++ +   F   + VLIA VD T   
Sbjct: 125740 LGSSDFDAEVIHSKKHALVEFYAPWCGHCKSLAPTYEEVGKIFSGEENVLIAKVDATAHA 125561

Query: 82     KPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELG 127
                L  +YGV GYPTIKYF P  ++ EDY GGR  D    F     G
Sbjct: 125560 -DLASRYGVNGYPTIKYFAPGSDDPEDYSGGRDKDSFIDFINENAG 125426


>gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581242,
              whole genome shotgun sequence
          Length = 870537

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
 Frame = -2

Query: 15     ASAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIAD 74
              +++  + LT DNFD+LVL SG    ++F APW GHCK + P+W+  AS  + + K+   D
Sbjct: 398486 SNSDVVTLTDDNFDDLVLNSGDVWLVEFYAPWCGHCKALAPEWEQAASDLKGAVKLGALD 398307

Query: 75     VDCTTGGKPLCEKYGVRGYPTIKYFNP---PDEEGEDYKGGRSLDELKKFA 122
                  T  +    +YG+RG+PTIK F P      + +DY+G R+   +  +A
Sbjct: 398306 ---ATAHEQKAAEYGIRGFPTIKVFGPSASSASDAQDYQGARTASGITSYA 398163



 Score = 40.4 bits (93), Expect(2) = 2e-08
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 30     LVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDC 77
              +V K      ++F APW GHCK + P+W   A   +    V    + C
Sbjct: 398968 MVQKDSGVWLVEFYAPWCGHCKNLAPEWKKAAKALDGVVNVAAGKLSC 398825



 Score = 35.0 bits (79), Expect(2) = 2e-08
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -2

Query: 75     VDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRS 114
              VDC    K L  ++GV+G+PTIK F    ++  DY+G R+
Sbjct: 398753 VDCDQH-KDLAAQFGVQGFPTIKIFGENKKKPTDYQGQRT 398637


>gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582027,
              whole genome shotgun sequence
          Length = 666937

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
 Frame = +3

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTF-EDSKKVLIADVDCTTG 80
              LT DN D  + +      ++F APW GHCK + P++   A    E    + IA VD T  
Sbjct: 177609 LTDDNIDAAITEHD-TLLVEFYAPWCGHCKNLAPEYAKAAKALLEQDPPIRIAKVDATAQ 177785

Query: 81     GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
               K   E++G++G+PT+K+F       +DY GGR+ +E++K+   + GP   +
Sbjct: 177786 TKA-GERFGIQGFPTLKFFKGDVGSPKDYDGGRTSEEIQKWVIKKSGPAVKI 177938



 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
 Frame = +3

Query: 27     FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG--GKPL 84
              F E V+ S +   ++F APW GHCK + P ++ LA  F D K +LIA +D T      P 
Sbjct: 178662 FTERVVDSDQDVLLEFYAPWCGHCKSLAPKYEELAENFADVKSILIAKMDATENEIDHPG 178841

Query: 85     CEKYGVRGYPTIKYFNPPDEEGE-DYKGGRSLDELKKF 121
               +   V+G+PTI +F   D++    Y+G R ++ L  F
Sbjct: 178842 VD---VKGFPTIIFFPAKDKQNPIVYEGARDVEGLTDF 178946


>gb|GL376569.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581364,
             whole genome shotgun sequence
          Length = 73393

 Score = 43.5 bits (101), Expect(2) = 4e-11
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = -1

Query: 13    AGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPD 56
             A  S+  + LT  +FDELV  S     IKF APW GHCK++  D
Sbjct: 28690 AERSSQVVTLTSASFDELVKDSKDPWIIKFYAPWCGHCKRLVRD 28559



 Score = 41.6 bits (96), Expect(2) = 4e-11
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -3

Query: 50    CKKMKPDWDSLASTFEDS-KKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGED 108
             C    P W  L+ + +DS     +A VDCT   + +C ++GV GYP++ Y    D     
Sbjct: 28502 CMLQAPVWHRLSKSLQDSGSSTKVAKVDCTVHRR-VCSRFGVGGYPSLFYVR--DGLVYK 28332

Query: 109   YKGGRSLDELKKF 121
             Y+ GR+L+   +F
Sbjct: 28331 YQKGRTLNAFLEF 28293


>gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581984,
              whole genome shotgun sequence
          Length = 290057

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 32/103 (31%), Positives = 52/103 (50%)
 Frame = +2

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
              L   N+DE++  +     + F +PW  HC+   P+W+ +A+ + +S KV +  VDCT   
Sbjct: 214685 LGASNWDEMINATDDVWIVDFYSPWCPHCRDFAPEWEKVAAFYAESTKVHVGAVDCTK-Q 214861

Query: 82     KPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAEN 124
                +C +  +  YP +K F+ P       +GG    E KKF  N
Sbjct: 214862 DAICTREKIHAYPAVKLFHVP-------RGG----EAKKFITN 214957


>gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582012,
              whole genome shotgun sequence
          Length = 298282

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
 Frame = +1

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED----SKKVLIADVDC 77
              LT DNFD+ + K  +   + F APW   C+++ P+W+  A+  +D    S++V +A VDC
Sbjct: 290092 LTNDNFDDYMRKY-ELVLVNFYAPWCPFCQQLNPEWERAAAQLDDHPEYSERVKMASVDC 290268

Query: 78     TTGGKP-LCEKYGVRGYPTI 96
              T      LC +  +R +P++
Sbjct: 290269 TDDKATWLCRRAHIRAFPSM 290328


>gb|GL376594.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581978,
             whole genome shotgun sequence
          Length = 97440

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
 Frame = +2

Query: 16    SAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED---SKKVLI 72
             S   + +  +N  E  LK      + + APW   C++++P W  +A T       +++ +
Sbjct: 12782 SDAVVTMLDENTFEPFLKEHHYVAVDYYAPWCIWCQRLEPVWTRVAKTLPSLHYGQRMRV 12961

Query: 73    ADVDCTTGGKPLCEKYGVRGYPTIKYFNPPD-EEGEDYKGGRSLDE-LKKFAENELGPGC 130
             A V+C      LC K  +R YPTI ++   D    E Y G R+++  + KF +   G   
Sbjct: 12962 ASVNCQEHPN-LCMKQFIRAYPTILFYKDGDISPVEMYLGDRTVEAFVDKFKQLFAGETD 13138

Query: 131   SVDLMDNCSEEQKGKLKE 148
             +V       EE+K KL E
Sbjct: 13139 AV-------EERKKKLHE 13171


>gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402,
              whole genome shotgun sequence
          Length = 979788

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -1

Query: 1      MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAA----FIKFLAPWXGHCKKMKPD 56
              +AL   +++ A  G+ +  + L  +NF+ L   +  A      ++F APW GHCK++ P 
Sbjct: 649263 VALMCSSVIAADVGSESNVVVLNEENFEHLTQAATGATTGDWLVEFYAPWCGHCKRLAPV 649084

Query: 57     WDSLA 61
              W+ LA
Sbjct: 649083 WEELA 649069


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.311    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,344,704
Number of Sequences: 82
Number of extensions: 141520
Number of successful extensions: 551
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 218
length of query: 223
length of database: 14,267,206
effective HSP length: 98
effective length of query: 125
effective length of database: 14,259,170
effective search space: 1782396250
effective search space used: 1782396250
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)