TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
         (223 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    59   1e-08
emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    58   3e-08
emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom...    55   3e-07

>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = +1

Query: 13       AGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLI 72
                AG  A  ++LT +NF E+VL S +   ++F APW GHCKK++P+W+S A     S  V +
Sbjct: 56966068 AGGKA-VVDLTENNFKEMVLDSDEMWLVEFFAPWCGHCKKLEPEWESAAGQLSGSVNVSV 56966244


>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG03
          Length = 7313625

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -2

Query: 21      ELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTF--EDSKKVLIADVDCT 78
               +LTPDNFDE+V   G    ++F APW GHCK +KP ++ +A      + +K+ +  V   
Sbjct: 4049810 KLTPDNFDEVVRAEGTDVMLEFYAPWCGHCKSLKPVYNEVADEVREREREKIPVVSVCFC 4049631

Query: 79      TGGKPLCEKYGVR 91
                GG  L E +  R
Sbjct: 4049630 NGGSGLREGWDKR 4049592


>emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG16
          Length = 8064047

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +2

Query: 15      ASAGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIAD 74
               A +  ++LT + FD +V+   K A ++F APW GHCK + P ++ L   F+    V++A 
Sbjct: 3709898 APSAVLDLTLETFDSIVMDPTKHALVEFYAPWCGHCKSLAPVYEKLGKVFQAETSVVVAK 3710077

Query: 75      V 75
               V
Sbjct: 3710078 V 3710080


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.311    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,006,374
Number of Sequences: 35
Number of extensions: 817754
Number of successful extensions: 2335
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2003
Number of HSP's gapped (non-prelim): 996
length of query: 223
length of database: 65,311,373
effective HSP length: 109
effective length of query: 114
effective length of database: 65,307,558
effective search space: 7445061612
effective search space used: 7445061612
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)