TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
         (223 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    76   7e-15
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    70   3e-13
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    50   3e-07
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    49   9e-07

>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
              sequence
          Length = 1278458

 Score = 75.9 bits (185), Expect = 7e-15
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
 Frame = +2

Query: 20     IELTPDNFDELVLKSGKAA-FIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCT 78
              +ELT  NFD+LV+   + + F+KF APW GHCK + PDW+ L S  +   +V IA +D T
Sbjct: 920753 VELTDSNFDDLVINDNENSWFVKFYAPWCGHCKSLAPDWEELGSMADG--RVKIAKLDAT 920926

Query: 79     TGGKPLCEKYGVRGYPTIKYFNPPDEEGE----DYKGGRSLDELKKFA 122
                   +  +Y ++G+PT+  F P  E+ E    +Y G R+ ++L +FA
Sbjct: 920927 Q-HTMMAHRYKIQGFPTLLMF-PAGEKREITPVNYNGPRTANDLFEFA 921064



 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 24/96 (25%), Positives = 44/96 (45%)
 Frame = +2

Query: 31     VLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV 90
              ++K      ++F A W GHCK   P+++  A   +    V+  D            +YG+
Sbjct: 920384 LVKENPVVIVEFFAEWCGHCKAFAPEYEKAAKALKGIVPVVAIDDQSDMA------EYGI 920545

Query: 91     RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENEL 126
              +G+PT+K F     + +D+ G R  + +   A + L
Sbjct: 920546 QGFPTVKVFTEHSVKPKDFTGPRRAESVLNAALSAL 920653


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
             sequence
          Length = 1332857

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 22    LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED-SKKVLIADVDCTTG 80
             LT  NF++ + KS +   + F APW GHC  ++P++ +  +     S  V    VD T  
Sbjct: 32051 LTSSNFEDFI-KSKEHVIVTFFAPWCGHCTALEPEFKATCAEISKLSPPVHCGSVDATE- 32224

Query: 81    GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
                L ++YGV GYPTIK+F+  D   ++Y G RS D   K+ +   GP   V
Sbjct: 32225 NMELAQQYGVSGYPTIKFFSGIDSV-QNYSGARSKDAFIKYIKKLTGPAVQV 32377



 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
 Frame = +2

Query: 20     IELTPDNFDELVLK--SGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDC 77
              I L    F E VL   + +  F+KF APW GHC+ + P+   ++  ++ ++KV IA VDC
Sbjct: 218720 INLKEYEFKEKVLDDTTDQIWFVKFYAPWCGHCRHLYPEILKVSEHYKGNEKVKIAKVDC 218899

Query: 78     TTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDN 137
              +   K LC++  V  YPT++ F+  +   +  +  R+  ++ KF E  + P    D++  
Sbjct: 218900 SVETK-LCKEQNVVSYPTMRIFSKGNLIKQYKRPKRTHTDIIKFIEKGIQP----DIIKI 219064

Query: 138    CSEEQKGKLKEYIDMAP 154
               S +Q  +L   +   P
Sbjct: 219065 QSYDQINELSSDLSAYP 219115



 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 29/95 (30%), Positives = 51/95 (53%)
 Frame = +2

Query: 27    FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCE 86
             F+E+V +S K   ++  A W GHCK ++P ++ L   ++D+ KV+IA ++      P  E
Sbjct: 33050 FEEIVFRSDKDVLLEIYAQWCGHCKNLEPIYNQLGEEYKDNDKVVIAKINGPQNDIPY-E 33226

Query: 87    KYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
              +  R +PTI +          Y G R+++  K+F
Sbjct: 33227 GFSPRAFPTILFVKAGTRTPIPYDGKRTVEAFKEF 33331


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
 Frame = +3

Query: 27     FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED-SKKVLIADVDCTTGGKPLC 85
              F + V+++     I F APW GHC+K++PD++ LA      S K+ IA +D   G +   
Sbjct: 211086 FKKEVIETNLDVLIVFYAPWCGHCRKLEPDYNVLAQRLRGISDKLKIAKID---GSQNEV 211256

Query: 86     EKYGVRGYPTIKYF-NPPDEEGEDYKGGRSL 115
              E   + GYP+I  F +    E   Y G RS+
Sbjct: 211257 ENIQILGYPSILLFKSEMKTEPILYNGDRSV 211349


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = -2

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
              L  + F E+V  S +   + F  PW GHCK   P ++ +A+       VL+A +D +   
Sbjct: 284882 LVGNTFKEIVYDSTRDVLVLFYTPWCGHCKTFDPIYNEVANIVTSKTNVLVAKIDMSANF 284703

Query: 82     KPLCEKYG--VRGYPTIKYFNPPDEEGE-DYKGGRSLDELKKF 121
               P  ++ G  +  +PTIK +   ++    D+ G R ++ +  F
Sbjct: 284702 IP-DDQIGRKIFRFPTIKLYKKREKANPIDFDGEREVNSILDF 284577


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.311    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,703,914
Number of Sequences: 8
Number of extensions: 20433
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 43
length of query: 223
length of database: 3,034,108
effective HSP length: 88
effective length of query: 135
effective length of database: 3,033,404
effective search space: 409509540
effective search space used: 409509540
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)