TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
(223 letters)
Database: C.parvum/genome.fa
8 sequences; 9,102,324 total letters
Searching........done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol... 76 7e-15
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 70 3e-13
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 50 3e-07
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol... 49 9e-07
>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
sequence
Length = 1278458
Score = 75.9 bits (185), Expect = 7e-15
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Frame = +2
Query: 20 IELTPDNFDELVLKSGKAA-FIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCT 78
+ELT NFD+LV+ + + F+KF APW GHCK + PDW+ L S + +V IA +D T
Sbjct: 920753 VELTDSNFDDLVINDNENSWFVKFYAPWCGHCKSLAPDWEELGSMADG--RVKIAKLDAT 920926
Query: 79 TGGKPLCEKYGVRGYPTIKYFNPPDEEGE----DYKGGRSLDELKKFA 122
+ +Y ++G+PT+ F P E+ E +Y G R+ ++L +FA
Sbjct: 920927 Q-HTMMAHRYKIQGFPTLLMF-PAGEKREITPVNYNGPRTANDLFEFA 921064
Score = 50.1 bits (118), Expect = 4e-07
Identities = 24/96 (25%), Positives = 44/96 (45%)
Frame = +2
Query: 31 VLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV 90
++K ++F A W GHCK P+++ A + V+ D +YG+
Sbjct: 920384 LVKENPVVIVEFFAEWCGHCKAFAPEYEKAAKALKGIVPVVAIDDQSDMA------EYGI 920545
Query: 91 RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENEL 126
+G+PT+K F + +D+ G R + + A + L
Sbjct: 920546 QGFPTVKVFTEHSVKPKDFTGPRRAESVLNAALSAL 920653
>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
sequence
Length = 1332857
Score = 70.5 bits (171), Expect = 3e-13
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Frame = +2
Query: 22 LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED-SKKVLIADVDCTTG 80
LT NF++ + KS + + F APW GHC ++P++ + + S V VD T
Sbjct: 32051 LTSSNFEDFI-KSKEHVIVTFFAPWCGHCTALEPEFKATCAEISKLSPPVHCGSVDATE- 32224
Query: 81 GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
L ++YGV GYPTIK+F+ D ++Y G RS D K+ + GP V
Sbjct: 32225 NMELAQQYGVSGYPTIKFFSGIDSV-QNYSGARSKDAFIKYIKKLTGPAVQV 32377
Score = 61.6 bits (148), Expect = 1e-10
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Frame = +2
Query: 20 IELTPDNFDELVLK--SGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDC 77
I L F E VL + + F+KF APW GHC+ + P+ ++ ++ ++KV IA VDC
Sbjct: 218720 INLKEYEFKEKVLDDTTDQIWFVKFYAPWCGHCRHLYPEILKVSEHYKGNEKVKIAKVDC 218899
Query: 78 TTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDN 137
+ K LC++ V YPT++ F+ + + + R+ ++ KF E + P D++
Sbjct: 218900 SVETK-LCKEQNVVSYPTMRIFSKGNLIKQYKRPKRTHTDIIKFIEKGIQP----DIIKI 219064
Query: 138 CSEEQKGKLKEYIDMAP 154
S +Q +L + P
Sbjct: 219065 QSYDQINELSSDLSAYP 219115
Score = 60.8 bits (146), Expect = 2e-10
Identities = 29/95 (30%), Positives = 51/95 (53%)
Frame = +2
Query: 27 FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCE 86
F+E+V +S K ++ A W GHCK ++P ++ L ++D+ KV+IA ++ P E
Sbjct: 33050 FEEIVFRSDKDVLLEIYAQWCGHCKNLEPIYNQLGEEYKDNDKVVIAKINGPQNDIPY-E 33226
Query: 87 KYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
+ R +PTI + Y G R+++ K+F
Sbjct: 33227 GFSPRAFPTILFVKAGTRTPIPYDGKRTVEAFKEF 33331
>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
sequence
Length = 875659
Score = 50.4 bits (119), Expect = 3e-07
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 27 FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED-SKKVLIADVDCTTGGKPLC 85
F + V+++ I F APW GHC+K++PD++ LA S K+ IA +D G +
Sbjct: 211086 FKKEVIETNLDVLIVFYAPWCGHCRKLEPDYNVLAQRLRGISDKLKIAKID---GSQNEV 211256
Query: 86 EKYGVRGYPTIKYF-NPPDEEGEDYKGGRSL 115
E + GYP+I F + E Y G RS+
Sbjct: 211257 ENIQILGYPSILLFKSEMKTEPILYNGDRSV 211349
>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
sequence
Length = 1104417
Score = 48.9 bits (115), Expect = 9e-07
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = -2
Query: 22 LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
L + F E+V S + + F PW GHCK P ++ +A+ VL+A +D +
Sbjct: 284882 LVGNTFKEIVYDSTRDVLVLFYTPWCGHCKTFDPIYNEVANIVTSKTNVLVAKIDMSANF 284703
Query: 82 KPLCEKYG--VRGYPTIKYFNPPDEEGE-DYKGGRSLDELKKF 121
P ++ G + +PTIK + ++ D+ G R ++ + F
Sbjct: 284702 IP-DDQIGRKIFRFPTIKLYKKREKANPIDFDGEREVNSILDF 284577
Database: C.parvum/genome.fa
Posted date: Feb 9, 2011 9:02 AM
Number of letters in database: 9,102,324
Number of sequences in database: 8
Lambda K H
0.311 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,703,914
Number of Sequences: 8
Number of extensions: 20433
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 43
length of query: 223
length of database: 3,034,108
effective HSP length: 88
effective length of query: 135
effective length of database: 3,033,404
effective search space: 409509540
effective search space used: 409509540
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)