genewise output Score 373.94 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000033_1.0 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLG F P+ LGL WRLT F+ +KG GCKVPQ+ LLKLL R FNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVF-----RANSN supercontig_1.-20311 tacgacgccggtccaataccagtgtagccagccaccggt cgata tacactgtccaggtcatcataggggatcaaattattatt gcaca ctaggccgtccgcgcgccgcgctacggcgacgcggcacc agcgc SPP00000033_1.0 87 RGLVGGQEEASQEAGLPAGAG-PSPTFPA-------LGIGMDSCVIPLR + G +++ + GA P+ ++PA +G+G+DSCV R NAVAGSEQQIAAPTPTSGGAAVPASSIPAAITADGTIGVGLDSCVTETR supercontig_1.-20179 aggggtgccaggcacaagggggcgttacggaagggaagggcgatgagac actcgcaaatccccccgggcctcccctccctccagctgtgtaggtcacg ccgttaaaaccgatggttttaggggccggactatacctttccctccggg SPP00000033_1.0 128 HGGLSLVQTTD FYPLVEDPYMM H GL LVQTTD F+PL+EDPY+M HPGLYLVQTTD F:F[ttc] FFPLIEDPYQM supercontig_1.-20032 ccgctcgcaagTTGTGAGTT Intron 1 AAGCttccaggctca acgtattacca <2-----[19997:19856]-2> ttcttaacaat tgtgtccgccc ccgctgttcag SPP00000033_1.0 151 GRIACANVLSDLYAMGITECDNMLML GRIACANVLSDLYAMG++ECDNMLML GRIACANVLSDLYAMGVSECDNMLML supercontig_1.-19821 GTCAGTG Intron 2 TAGgcagtgagtagttgaggtgtgaacac <0-----[19821:19715]-0>ggtcgcattgatactgtcagaatttt tatgccttgctgcagcgcgctcgcgg SPP00000033_1.0 177 LSVSQSMSEEEREKVTPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGG L VS +++ EE VTPL++KGF D +E GT V GGQTV NPW+++GG LGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVLGGQTVKNPWFLLGG supercontig_1.-19636 cggaaatacggtgagaccgaagtcgctcgggaagcggcagaactttcgg tgtgcctccaactttcctttagtaatgaacgcattggactaacgtttgg ctaccgggagatctcggtcgactccgcagcaccgtcgagcatcgtgccc SPP00000033_1.0 226 VATVVCQPNEFIMP SAVVGDVLV VAT V +E+IMP A GDVLV VATSVVGRHEMIMP D:D[gat] GAKSGDVLV supercontig_1.-19489 ggatgggccgaaacGGTACACG Intron 3 CAGATggaagggcg tcccttggaatttc <1-----[19446:19363]-1> gcaggattt ccattctttagcga caacccccg SPP00000033_1.0 250 LTKPLGTQVAVNAHQW-LDNPERWNKVKMVVSREEVELAYQEAMFNMAT LTKPLG Q+AVNAHQW L +PER+ ++ V++ E+V AY+ A+ NM LTKPLGNQLAVNAHQWMLTDPERYKRLDGVLTNEQVIEAYEHAITNMTR supercontig_1.-19333 caaccgaccggagcctacagcgctaccgggcaagcgaggtgcgaaaaac tcactgaatctacaagttcacagaagtagttcaaattacaaactcatcg ccggtatagcctccggggatcaacgcgcctcgcggtcaccatctgcgat SPP00000033_1.0 298 LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPI L+R AA LM F AHAATD+TGFGILGH++NLA+ Q++ V+F I P+ LSRVAARLMREFGAHAATDVTGFGILGHARNLARSQKDSVNFEIDVFPV supercontig_1.-19186 cacgggccacgtggcggaggagtgacgcgcacgcacagagatgaggtcg tggtccgttgatgcacccatcgtgttgacgatcggaaagtatatattct gccgcccggaacttctcgtgtttatgtccgcttttggcccttattccag SPP00000033_1.0 347 IAKMAAVSKASGRFGLLQGTSAETSGGLLICL---------PREQAARF + M A+ +A+ F LL+GTSAETSGGLLI L R A R+ LRHMIAMERATPVFHLLEGTSAETSGGLLIALGPSPDGKLDARANAQRY supercontig_1.-19039 cccaagagcgacgtcccggatggatggccagcgctcggacggcgagcct tgattctagcccttattagcccaccggtttctgcccagatacgcacaga gccgtcggcccccctgggctacggctatctggtcgatcattgaaccgct SPP00000033_1.0 387 CSEIKSSKYGEGHQAWIVGIVEKG C E+ + G QA+I+G V +G CDEL--ARQDRGFQAYIIGRVVEG supercontig_1.-18892 tggc gccgcgtcgtaagcgggg gaat cgaaggtacattggttag ccgg ccgttccactctctatat // Making a F in phase 2 intron Making a D in phase 1 intron >supercontig_1.1:subseq(1135651,30332).pep FNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNAVAGSEQQIAAPTPT SGGAAVPASSIPAAITADGTIGVGLDSCVTETRHPGLYLVQTTDFFFPLIEDPYQMGRIA CANVLSDLYAMGVSECDNMLMLLGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVLGGQ TVKNPWFLLGGVATSVVGRHEMIMPDGAKSGDVLVLTKPLGNQLAVNAHQWMLTDPERYK RLDGVLTNEQVIEAYEHAITNMTRLSRVAARLMREFGAHAATDVTGFGILGHARNLARSQ KDSVNFEIDVFPVLRHMIAMERATPVFHLLEGTSAETSGGLLIALGPSPDGKLDARANAQ RYCDELARQDRGFQAYIIGRVVEG // >supercontig_1.1:subseq(1135651,30332).[20311:18825].sp TTCAATCCAGAGACGCTCGGCCTGCCTGCCGACTGGCGCCTGACCAAGTTCACCCAGCTC AAGGGCTGTGGATGCAAGGTGCCCCAGAAAGACCTGCTCAAGCTGCTCGAAGTCTTCCGA GCGAACTCGAACAACGCCGTGGCTGGTTCAGAACAACAAATCGCCGCGCCAACTCCGACG AGTGGTGGTGCTGCAGTGCCGGCGTCGTCCATCCCGGCGGCAATCACTGCAGATGGAACC ATCGGTGTTGGTCTCGACAGCTGTGTCACCGAGACGCGGCATCCGGGTCTGTATCTCGTC CAGACCACCGACTTCTTCTTCCCGCTCATTGAGGATCCTTACCAAATGGGTCGAATTGCG TGCGCCAATGTTTTGAGCGATTTGTACGCAATGGGCGTGTCCGAGTGCGATAACATGCTC ATGCTGCTCGGTGTAAGCACCACGTTGACGCCAGAGGAATCTGTCATTGTCACGCCGCTT GTCATGAAAGGCTTTCACGACCTGTGCCAAGAGGCCGGAACCAACGTGCTTGGCGGGCAA ACGGTCAAAAATCCCTGGTTTTTGCTCGGCGGCGTCGCCACATCTGTTGTCGGTCGTCAT GAAATGATCATGCCAGATGGCGCAAAAAGCGGCGACGTCCTCGTGCTCACCAAGCCGCTT GGAAATCAACTGGCCGTCAATGCCCACCAGTGGATGCTGACAGATCCCGAACGATACAAG CGCCTGGACGGCGTTCTCACGAACGAGCAGGTTATCGAAGCCTACGAACATGCCATTACG AACATGACACGTCTGAGCCGCGTGGCCGCCCGCCTGATGCGAGAATTCGGTGCTCACGCT GCCACGGATGTGACTGGTTTTGGAATTCTGGGTCACGCCCGGAACCTTGCTCGTAGTCAG AAGGACAGCGTCAATTTTGAAATTGATGTCTTCCCAGTGCTGCGCCACATGATTGCCATG GAGCGCGCCACCCCCGTCTTCCATCTGCTGGAGGGCACTTCAGCCGAGACGTCCGGTGGA CTTCTCATTGCGCTGGGTCCCTCGCCAGATGGCAAACTTGATGCGCGAGCAAACGCCCAG CGCTATTGCGACGAGCTGGCCCGCCAGGATCGTGGCTTCCAAGCCTATATCATTGGCCGT GTAGTTGAAGGT // supercontig_1.1:subseq(1135651,30332) GeneWise match 20311 18827 392.90 - . supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise cds 20311 19998 0.00 - 0 supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise intron 19997 19856 0.00 - . supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise cds 19855 19822 0.00 - 1 supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise intron 19821 19715 0.00 - . supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise cds 19714 19447 0.00 - 0 supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise intron 19446 19363 0.00 - . supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 supercontig_1.1:subseq(1135651,30332) GeneWise cds 19362 18827 0.00 - 2 supercontig_1.1:subseq(1135651,30332)-genewise-prediction-1 //