genewise output
Score 179.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000048_1.0   71 LIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGV-TQFDTVEMIVSTS 
                     LI T DFF+P+V DP L+GRIA ANVLSD YA+G+ T   T+ M+V  + 
                     LISTTDFFFPLVEDPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAA 
gi|151559141|d-20419 caaaagtttccgggctcagcagggagctggtgcgacaccaaacacgtgg 
                     ttgccatttcttaacattggtcccattcacactgtgcccgctttttgcc 
                     gcctgcctcagtatgtcgactacgtggctgctgtcaaagtcgggcgtga 


SPP00000048_1.0  119 TSFSEKE-RDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGG 
                     T +     R  V   +M GF ++    G   T +   Q  +NPW +IGG 
                     TEIEPPALRAGVTQTMMAGFIDACHEAG---TQVTGGQTTLNPWPLIGG 
gi|151559141|d-20272 agagccgccgggacaaaggtaggtcggg   acgaggcaacactccagg 
                     cataccctgcgtcacttcgttacgaacg   catcggacctacgcttgg 
                     agtgtagtatcaagcgggacttcccgtt   tacaatggggtgggccat 


SPP00000048_1.0  167 IATSVCRSEEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEK-- 
                     +A  V    E+++P  AQPGD +VLTKPLG Q+A++ + W L Q E    
                     VAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQW-LGQMEDAH 
gi|151559141|d-20134 gggggcccggtcacgggccggaagcaaccgacggaactct cgcagggc 
                     tcatttcggatttcaccacgactttcactgcatctataag tgataaca 
                     tcaccctacgtaggtagggccctgtgaccaggacctccgg caaggttc 


SPP00000048_1.0  214 YKKLLS                          CSDADIKETFEIAVKSM 
                     Y  LL                            + ADI   +++A  SM 
                     YLHLLE          E:M[atg]        LTPADICRAYDVACLSM 
gi|151559141|d-19990 ttcccgAGTCTAGA  Intron 1   AAGTGcacggatcgtgggtcaa 
                     atatta <1-----[19971:19720]-1>  tcccatggcaatcgtgt 
                     cgttgg                          gcagtcttcctgttttg 


SPP00000048_1.0  238 TYLNKNAA-LLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINK 
                      +LN  AA LL+    AH  TDITGFG+LGHA NLA+ QK  V ++I+  
                     AHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDV 
gi|151559141|d-19666 gccagaggccctgagggcggagaagtgacgcgcacgcacagcggagagg 
                     catacgccatttaggccactcatcgtgttgacaatcgaaacctatatat 
                     ctccaatcggtaatttgccctcactcgtggccatagacgatcgcggtta 


SPP00000048_1.0  286 LPIIKNVLKFSTLVGQSTKFR--SGRSVETSGGLLICLPADAADK     
                     LPII+ +      +     FR   G S ETSGGLLIC  A + ++     
                     LPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTER     
gi|151559141|d-19519 ccaacgaaaggcgtcggaatcccggttggaaggccattggtaagc     
                     tcttggtcgcagctaggattgttagtccacgggtttgtgccgcag     
                     tgctgtggcattagataagcatggcctggccctactcctaccagg     


//
Making a M in phase 1 intron
>gi|151559141|dbj|AP006498.2|:subseq(458390,30719).pep
LISTTDFFFPLVEDPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAG
VTQTMMAGFIDACHEAGTQVTGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVL
TKPLGTQVAINLYQWLGQMEDAHYLHLLEMLTPADICRAYDVACLSMAHLNARAAQLLLE
SGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLE
GFSAETSGGLLICFGASSTER
//
>gi|151559141|dbj|AP006498.2|:subseq(458390,30719).[20419:19383].sp
CTGATCAGCACTACGGACTTCTTTTTCCCACTGGTTGAAGATCCGTATCTCATGGGACGC
ATTGCAGCCGCGAATGTGCTGTCCGATGCGTACGCTCTGGGTATCCGAACACCACCGAGT
ACCATGCTGATGCTCGTGTGTGCGGCAACAGAGATTGAGCCTCCAGCGCTTCGAGCTGGC
GTAACACAGACCATGATGGCGGGATTCATTGATGCCTGCCACGAGGCTGGTACTCAAGTC
ACAGGAGGTCAGACGACGCTGAATCCGTGGCCGCTCATCGGAGGTGTTGCCGAAGTCGTC
CTCCCTCGAGGCGAGTTTCTAATGCCGGATGCAGCGCAGCCGGGCGACACCATTGTGCTT
ACGAAACCCCTCGGAACGCAGGTAGCCATCAATCTCTACCAGTGGCTCGGACAAATGGAG
GATGCTCACTACTTGCATCTTCTGGAGATGCTGACCCCAGCGGATATCTGTCGTGCCTAC
GATGTGGCTTGTCTTAGTATGGCCCATCTCAACGCAAGAGCTGCCCAGCTGCTTTTAGAA
AGTGGTGCTGCGCACGCCGTCACTGACATAACCGGTTTCGGGATTCTGGGGCACGCCCAA
AATCTAGCGCGAAACCAGAAAGCTCCCGTGGACATGGAGATTGATGTACTTCCGATCATT
CGGGGTATGACGAGCGCAGATCGTGCATTGCAAGGTGGAAAAATGTTCCGACTTCTGGAG
GGCTTCTCTGCGGAGACCAGCGGCGGTCTACTCATTTGCTTCGGTGCATCCAGCACAGAG
CGG
//
gi|151559141|dbj|AP006498.2|:subseq(458390,30719)	GeneWise	match	20419	19385	183.00	-	.	gi|151559141|dbj|AP006498.2|:subseq(458390,30719)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458390,30719)	GeneWise	cds	20419	19972	0.00	-	0	gi|151559141|dbj|AP006498.2|:subseq(458390,30719)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458390,30719)	GeneWise	intron	19971	19720	0.00	-	.	gi|151559141|dbj|AP006498.2|:subseq(458390,30719)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458390,30719)	GeneWise	cds	19719	19385	0.00	-	2	gi|151559141|dbj|AP006498.2|:subseq(458390,30719)-genewise-prediction-1
//