genewise output
Score 229.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000056_1.0   13 FRLTKFSTLRGUGSKVPQ                          DVLNR 
                     FRLT++STL+G G KVPQ                          DV    
                     FRLTRYSTLKGCGCKVPQ          -:R[aga]        DVSVE 
gi|151559141|d-20746 tccacttacagtgtagccAGTGAGTT  Intron 1   CAGGAggtgg 
                     tgtcgacctaggggatca <1-----[20691:20578]-1>  atcta 
                     cctggttatgcttcgtta                          cccga 


SPP00000056_1.0   36 LLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKHDLFLVQSVDFFY 
                     L  G+    +     +  ++++      +++       L+L+ + DFF+ 
                     LGVGMDASVV--RLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFF 
gi|151559141|d-20560 cgggaggtgg  ctacctaaccaagagggagcttgaccctcaaaagttt 
                     tgtgtacctt  gtcatcggaagcaaacaaccctgcactattgccattt 
                     cgtcgcccga  cgcgcccaagcggaccgtgcccccggatgcctgcctc 


SPP00000056_1.0   85 PLIDDPFMLGKIALANVVSDVFAVGA-TEIDQIKLIVTAPTEFTEQE-R 
                     PL++DP+++G+IA ANV+SD +A+G  T    + ++V A TE+     R 
                     PLVEDPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALR 
gi|151559141|d-20419 ccgggctcagcagggagctggtgcgacaccaaacacgtggagagccgcc 
                     cttaacattggtcccattcacactgtgcccgctttttgcccataccctg 
                     agtatgtcgactacgtggctgctgtcaaagtcgggcgtgaagtgtagta 


SPP00000056_1.0  132 EVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELI 
                       V   +M GF++A       V  G    NPW +IGG A  V  R E + 
                     AGVTQTMMAGFIDACHEAGTQVTGGQTTLNPWPLIGGVAEVVLPRGEFL 
gi|151559141|d-20272 gggacaaaggtaggtcgggacgaggcaacactccagggggggcccggtc 
                     cgtcacttcgttacgaacgcatcggacctacgcttggtcatttcggatt 
                     tcaagcgggacttcccgtttacaatggggtgggccattcaccctacgta 


SPP00000056_1.0  181 MPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRE        
                     MP  AQPGD +VLTKPLGTQ+A N Y W+G+ +   +  L E        
                     MPDAAQPGDTIVLTKPLGTQVAINLYQWLGQMEDAHYLHLLE        
gi|151559141|d-20125 acgggccggaagcaaccgacggaactctcgcagggcttcccg        
                     tcaccacgactttcactgcatctataagtgataacaatatta        
                     ggtagggccctgtgaccaggacctccggcaaggttccgttgg        


SPP00000056_1.0  223                           FTVADIEQTYRIALESMSRLNKT 
                                               +T ADI + Y +A  SM+ LN   
                               R:M[atg]        LTPADICRAYDVACLSMAHLNAR 
gi|151559141|d-19999 AGTCTAGA  Intron 2   AAGTGcacggatcgtgggtcaagccaga 
                      <1-----[19998:19747]-1>  tcccatggcaatcgtgtcatacg 
                                               gcagtcttcctgttttgctccaa 


SPP00000056_1.0  247 GAELMKKYG-AHAATDVTGFGLYGHAENLASHQTADVDFHLDTLPIIKN 
                      A+L+ + G AHA TD+TGFG+ GHA+NLA +Q A VD+ +D LPII+  
                     AAQLLLESGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDVLPIIRG 
gi|151559141|d-19675 ggccctgagggcggagaagtgacgcgcacgcacagcggagaggccaacg 
                     ccatttaggccactcatcgtgttgacaatcgaaacctatatattcttgg 
                     tcggtaatttgccctcactcgtggccatagacgatcgcggttatgctgt 


SPP00000056_1.0  295 VREIAETL--GRGAKLLAGKAVETSGGLLICL--------PREAAAGFC 
                     +      L  G+  +LL G + ETSGGLLIC          +  A  FC 
                     MTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTERSSQVVARQFC 
gi|151559141|d-19528 aaaggcgtcggaatcccggttggaaggccattggtaagcaacgggcctt 
                     tcgcagctaggattgttagtccacgggtttgtgccgcagggattcgatg 
                     ggcattagataagcatggcctggccctactcctaccaggccacccggtc 


SPP00000056_1.0  334 EEYRRCTKH-EAWIVGHVEKGARGVKMNPNLNILSV              
                     E+      H  AWIVG V  G+R  ++  ++ IL V              
                     EKLATVDDHWPAWIVGRVVPGSREARILDHVKILEV              
gi|151559141|d-19381 gacgagggctcgtaggaggcgacggaacgcgaatgg              
                     aatcctaaagccgttggttcgggacgttaatattat              
                     aagcgactcggagtacagcgaccgtacctcgataat              


//
Making a R in phase 1 intron
Making a M in phase 1 intron
>gi|151559141|dbj|AP006498.2|:subseq(458363,30746).pep
FRLTRYSTLKGCGCKVPQRDVSVELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQP
LYLISTTDFFFPLVEDPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALR
AGVTQTMMAGFIDACHEAGTQVTGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTI
VLTKPLGTQVAINLYQWLGQMEDAHYLHLLEMLTPADICRAYDVACLSMAHLNARAAQLL
LESGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRL
LEGFSAETSGGLLICFGASSTERSSQVVARQFCEKLATVDDHWPAWIVGRVVPGSREARI
LDHVKILEV
//
>gi|151559141|dbj|AP006498.2|:subseq(458363,30746).[20746:19272].sp
TTCCGCCTTACGCGGTATTCTACACTTAAGGGCTGTGGTTGCAAGGTTCCTCAAAGAGAC
GTCTCCGTGGAACTCGGGGTTGGCATGGACGCCTCCGTGGTACGCTTGACCCAGCTCTCC
AGCAGACAACAGAGCACGGAGAAAGACGCCGAGAATGCGCCCTCCTTCGGCACCCAGCCG
CTATATCTGATCAGCACTACGGACTTCTTTTTCCCACTGGTTGAAGATCCGTATCTCATG
GGACGCATTGCAGCCGCGAATGTGCTGTCCGATGCGTACGCTCTGGGTATCCGAACACCA
CCGAGTACCATGCTGATGCTCGTGTGTGCGGCAACAGAGATTGAGCCTCCAGCGCTTCGA
GCTGGCGTAACACAGACCATGATGGCGGGATTCATTGATGCCTGCCACGAGGCTGGTACT
CAAGTCACAGGAGGTCAGACGACGCTGAATCCGTGGCCGCTCATCGGAGGTGTTGCCGAA
GTCGTCCTCCCTCGAGGCGAGTTTCTAATGCCGGATGCAGCGCAGCCGGGCGACACCATT
GTGCTTACGAAACCCCTCGGAACGCAGGTAGCCATCAATCTCTACCAGTGGCTCGGACAA
ATGGAGGATGCTCACTACTTGCATCTTCTGGAGATGCTGACCCCAGCGGATATCTGTCGT
GCCTACGATGTGGCTTGTCTTAGTATGGCCCATCTCAACGCAAGAGCTGCCCAGCTGCTT
TTAGAAAGTGGTGCTGCGCACGCCGTCACTGACATAACCGGTTTCGGGATTCTGGGGCAC
GCCCAAAATCTAGCGCGAAACCAGAAAGCTCCCGTGGACATGGAGATTGATGTACTTCCG
ATCATTCGGGGTATGACGAGCGCAGATCGTGCATTGCAAGGTGGAAAAATGTTCCGACTT
CTGGAGGGCTTCTCTGCGGAGACCAGCGGCGGTCTACTCATTTGCTTCGGTGCATCCAGC
ACAGAGCGGAGCAGCCAAGTCGTCGCCCGGCAGTTTTGCGAAAAACTGGCCACGGTAGAC
GATCACTGGCCGGCATGGATTGTAGGCAGAGTGGTCCCGGGAAGCCGCGAGGCTAGAATC
CTCGATCACGTGAAAATTTTAGAAGTT
//
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	match	20746	19274	238.40	-	.	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	cds	20746	20692	0.00	-	0	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	intron	20691	20578	0.00	-	.	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	cds	20577	19999	0.00	-	2	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	intron	19998	19747	0.00	-	.	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
gi|151559141|dbj|AP006498.2|:subseq(458363,30746)	GeneWise	cds	19746	19274	0.00	-	2	gi|151559141|dbj|AP006498.2|:subseq(458363,30746)-genewise-prediction-1
//