
genewise output
Score 219.27 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000033_1.0  118 GMDSCVIPLRH---GGLSLVQTTDFFYPLVEDPYMM              
                     GMDS V+ ++H   G L ++ TTDFFYPLV+DPY++              
                     GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQ              
gi|288565291|gb20196 gagtaggaaaccatggctaataagtttccgcgctgc              
                     gtacgttataacatgatattcccattacttaacata              
                     cgcgcccgcgccgtgcccgtccctccctgcatccca              


SPP00000033_1.0  151                        GRIACANVLSDLYAMGITECDNMLML 
                                            GRIACANVLSDLYAMG+TE D MLM+ 
                                            GRIACANVLSDLYAMGVTEVDTMLMI 
gi|288565291|gb20304 GTACTTT  Intron 1   TAGgcagtgagctgctgaggagggaacaa 
                     <0-----[20304:20346]-0>ggtcgcattcatactgtcatactttt 
                                            cctccccgcgtgtggcccaccggcgc 


SPP00000033_1.0  177 LSVSQSMSEEEREKVTPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGG 
                     L VS++M++ ER+ VT  ++ GF D A E GT VTGGQTV+NPW I+GG 
                     LGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGG 
gi|288565291|gb20425 cggtcaaagcgcgggaaccacgtagcgcgggaagaggcagaactcaggg 
                     tgtcgctcatagattccattagtaatcgacgcatcggacttacgcttgg 
                     cctgcgggccgcccggggcccccccttcatccccgccgccgcgggtccc 


SPP00000033_1.0  226 VATVVCQ                          NEFIMPDSAVVGDVLV 
                     VA  V                            +E+I P++A  G +LV 
                     VAMSVRA          P:E[gag]        SEIIRPENATAGQMLV 
gi|288565291|gb20572 ggaagcgGGTAGTCC  Intron 2   TAGAGtgaaccgagaggcacg 
                     tctgtgc <1-----[20594:20644]-1>  cattgcaacccgattt 
                     ccgttcc                          cgctagacgccaagcg 


SPP00000033_1.0  250 LTKPL                          TQVAVNAHQWLDNPERWN 
                     LTKPL                          TQ+AVNA+Q  D P RW+ 
                     LTKPL           G:G[ggc]       TQLAVNAYQMKDQPARWS 
gi|288565291|gb20695 caaccGGGTGCGCT  Intron 3   TAGCaccggagtcaagccgctt 
                     tcact  <2-----[20712:20765]-2> catctacaataaaccggc 
                     ccgcc                          gggcgcgcgggcgcgcgc 


SPP00000033_1.0  274 KVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHT               
                     KV+  ++RE  + A+  A  +M+ LN   A LMH                
                     KVESFLTREMADRAFSVASESMSRLNVNGAKLMHK               
gi|288565291|gb20821 aggattacgaggcgtaggtgtaaccagaggacaca               
                     atagttcgatcagctgtccactggtatagcattaa               
                     gcatcgggggcccgcccacgggcaccccccgcgcg               


SPP00000033_1.0  309                        FNAHAATDITGFGILGHS         
                                                +ATD+TGFGILGH+         
                                            HGVTSATDVTGFGILGHA         
gi|288565291|gb20926 GTATTAT  Intron 4   TAGcggatgaggagtgacgcg         
                     <0-----[20926:20975]-0>agtccccatcgtgttgac         
                                            ccgcagaccgctcccgcc         


SPP00000033_1.0  327                           NLAKQQRNEVSFVIHNLPIIAKM 
                                               N+A  Q+ +V F +H LP+I  M 
                                Q:Q[caa]       NMATSQKADVDFELHTLPVIKDM 
gi|288565291|gb21030 CAGTACGGC  Intron 5   TAGAaagatcaggggtgccaccgaaga 
                       <2-----[21032:21088]-2> atcccaacatatatactcttaat 
                                               cgacgagccgttggcgggccgcg 


SPP00000033_1.0  351 AAVSKA-SGRFGLLQGTSAETSGGLLICLPREQA                
                      AV++A  G++ L  G S+ETSGGLL+ +  ++A                
                     LAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA                
gi|288565291|gb21159 cggaggtagctccgcgtttgatggccgtagggcg                
                     tctaactagaggtatgtccaccggtttctacagc                
                     cggcggcccagatgcccgcgggctctcgccccct                


//
Making a E in phase 1 intron
Making a G in phase 2 intron
Making a Q in phase 2 intron
>gi|288565291|gb|GG743906.1|:subseq(122480,30137).pep
GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQGRIACANVLSDLYAMGVTEVDTML
MILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGGVAMSVRAES
EIIRPENATAGQMLVLTKPLGTQLAVNAYQMKDQPARWSKVESFLTREMADRAFSVASES
MSRLNVNGAKLMHKHGVTSATDVTGFGILGHAQNMATSQKADVDFELHTLPVIKDMLAVN
EAFNGQWRLELGFSSETSGGLLVSIDADRA
//
>gi|288565291|gb|GG743906.1|:subseq(122480,30137).[20196:21260].sp
GGCATGGACTCGAGCGTCGTCAAGATCAAGCACCCCAAGTTTGGGGACCTCTACATGATT
TCCACCACCGATTTCTTCTACCCTCTGGTCCAAGATCCCTACGTCCAAGGCCGCATTGCC
TGCGCCAACGTGCTCTCGGATCTGTATGCGATGGGCGTCACCGAAGTCGACACGATGCTC
ATGATCCTCGGCGTTTCGCGCACGATGACGGACCTCGAGCGCGACGTCGTGACGACGCAG
CTCATCCACGGCTTCAACGACCTTGCTCGCGAAGCTGGCACCAACGTCACGGGCGGCCAG
ACCGTCATGAACCCGTGGCCGATTGTCGGCGGCGTCGCCATGAGTGTTCGCGCCGAGTCC
GAGATCATTCGACCGGAAAACGCGACCGCCGGACAAATGCTCGTGCTCACCAAGCCCCTC
GGCACGCAGCTGGCCGTGAACGCGTACCAGATGAAGGACCAGCCCGCGCGCTGGTCCAAG
GTCGAAAGTTTCTTGACGCGGGAGATGGCCGACCGCGCGTTCAGCGTCGCATCCGAGTCG
ATGAGCCGACTCAACGTCAACGGCGCCAAGCTCATGCACAAGCACGGCGTGACCTCAGCG
ACAGACGTCACGGGCTTTGGCATCCTCGGGCACGCCCAAAACATGGCAACCTCGCAAAAG
GCCGACGTGGATTTTGAGCTGCACACGCTGCCGGTCATCAAGGACATGCTCGCGGTGAAC
GAGGCGTTCAACGGCCAATGGCGACTTGAGCTCGGCTTCTCGTCCGAGACGTCGGGCGGT
CTCCTTGTCTCGATCGACGCCGACCGCGCT
//
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	match	20196	21260	221.27	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	20196	20303	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	intron	20304	20346	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	20347	20593	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	intron	20594	20644	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	20645	20711	0.00	+	2	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	intron	20712	20765	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	20766	20925	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	intron	20926	20975	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	20976	21031	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	intron	21032	21088	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122480,30137)	GeneWise	cds	21089	21260	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122480,30137)-genewise-prediction-1
//
