
genewise output
Score 126.10 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000048_1.0   55 GMDCAVIPLKRHK--DYLLIQTVDFFYPMVNDPELL              
                     GMD +V+ +K  K  D  +I T DFFYP+V DP +               
                     GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQ              
gi|288565291|gb20193 gagtaggaaaccatggctaataagtttccgcgctgc              
                     gtacgttataacatgatattcccattacttaacata              
                     cgcgcccgcgccgtgcccgtccctccctgcatccca              


SPP00000048_1.0   89                        GRIALANVLSDVYAVGVTQFDTVEMI 
                                            GRIA ANVLSD+YA+GVT+ DT+ MI 
                                            GRIACANVLSDLYAMGVTEVDTMLMI 
gi|288565291|gb20301 GTACTTT  Intron 1   TAGgcagtgagctgctgaggagggaacaa 
                     <0-----[20301:20343]-0>ggtcgcattcatactgtcatactttt 
                                            cctccccgcgtgtggcccaccggcgc 


SPP00000048_1.0  115 VSTSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCI 
                     +  S ++++ ERDVV   ++ GF +  +  G   T +   Q  +NPW I 
                     LGVSRTMTDLERDVVTTQLIHGFNDLAREAG---TNVTGGQTVMNPWPI 
gi|288565291|gb20422 cggtcaaagcgcgggaaccacgtagcgcggg   aagaggcagaactca 
                     tgtcgctcatagattccattagtaatcgacg   catcggacttacgct 
                     cctgcgggccgcccggggcccccccttcatc   cccgccgccgcgggt 


SPP00000048_1.0  164 IGGIATSVCR                          EEIILPSNAQPGD 
                     +GG+A SV                             EII P NA  G  
                     VGGVAMSVRA          S:E[gag]        SEIIRPENATAGQ 
gi|288565291|gb20560 gggggaagcgGGTAGTCC  Intron 2   TAGAGtgaaccgagaggc 
                     tggtctgtgc <1-----[20591:20641]-1>  cattgcaacccga 
                     cccccgttcc                          cgctagacgccaa 


SPP00000048_1.0  188 VLVLTKPLGGQMAM---------DAHLWQL--------NQTEKYKKLLS 
                     +LVLTKPLG  + +          AH  QL         Q  ++ K+ S 
                     MLVLTKPLGCALVLGGEFIASCCHAHSTQLAVNAYQMKDQPARWSKVES 
gi|288565291|gb20683 acgcaaccgtgcgcgggtagtttcgcaaccggagtcaagccgcttagga 
                     ttttcactggctttggattccggacagcatctacaataaaccggcatag 
                     gcgccgccgctccttgactcacttatcgggcgcgcgggcgcgcgcgcat 


SPP00000048_1.0  220 ECSDADIKETFEIAVKSMTYLNKNAALLMHK                   
                       +       F +A +SM+ LN N A LMHK                   
                     FLTREMADRAFSVASESMSRLNVNGAKLMHK                   
gi|288565291|gb20830 ttacgaggcgtaggtgtaaccagaggacaca                   
                     ttcgatcagctgtccactggtatagcattaa                   
                     cgggggcccgcccacgggcaccccccgcgcg                   


SPP00000048_1.0  251                        YQAHCATDITGFGLLGHA         
                                            +    ATD+TGFG+LGHA         
                                            HGVTSATDVTGFGILGHA         
gi|288565291|gb20923 GTATTAT  Intron 3   TAGcggatgaggagtgacgcg         
                     <0-----[20923:20972]-0>agtccccatcgtgttgac         
                                            ccgcagaccgctcccgcc         


SPP00000048_1.0  269                           NLAQFQKEKVLFQINKLPIIKNV 
                                               N+A  QK  V F+++ LP+IK++ 
                                N:Q[caa]       NMATSQKADVDFELHTLPVIKDM 
gi|288565291|gb21027 CAGTACGGC  Intron 4   TAGAaagatcaggggtgccaccgaaga 
                       <2-----[21029:21085]-2> atcccaacatatatactcttaat 
                                               cgacgagccgttggcgggccgcg 


SPP00000048_1.0  293 LKFSTLVGQSTKFRSGRSVETSGGLLICLPADAA                
                     L  +       ++  G S ETSGGLL+ + AD A                
                     LAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA                
gi|288565291|gb21156 cggaggtagctccgcgtttgatggccgtagggcg                
                     tctaactagaggtatgtccaccggtttctacagc                
                     cggcggcccagatgcccgcgggctctcgccccct                


//
Making a E in phase 1 intron
Making a Q in phase 2 intron
>gi|288565291|gb|GG743906.1|:subseq(122483,30140).pep
GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQGRIACANVLSDLYAMGVTEVDTML
MILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGGVAMSVRAES
EIIRPENATAGQMLVLTKPLGCALVLGGEFIASCCHAHSTQLAVNAYQMKDQPARWSKVE
SFLTREMADRAFSVASESMSRLNVNGAKLMHKHGVTSATDVTGFGILGHAQNMATSQKAD
VDFELHTLPVIKDMLAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA
//
>gi|288565291|gb|GG743906.1|:subseq(122483,30140).[20193:21257].sp
GGCATGGACTCGAGCGTCGTCAAGATCAAGCACCCCAAGTTTGGGGACCTCTACATGATT
TCCACCACCGATTTCTTCTACCCTCTGGTCCAAGATCCCTACGTCCAAGGCCGCATTGCC
TGCGCCAACGTGCTCTCGGATCTGTATGCGATGGGCGTCACCGAAGTCGACACGATGCTC
ATGATCCTCGGCGTTTCGCGCACGATGACGGACCTCGAGCGCGACGTCGTGACGACGCAG
CTCATCCACGGCTTCAACGACCTTGCTCGCGAAGCTGGCACCAACGTCACGGGCGGCCAG
ACCGTCATGAACCCGTGGCCGATTGTCGGCGGCGTCGCCATGAGTGTTCGCGCCGAGTCC
GAGATCATTCGACCGGAAAACGCGACCGCCGGACAAATGCTCGTGCTCACCAAGCCCCTC
GGGTGCGCTCTCGTCCTTGGTGGGGAATTCATTGCCTCATGCTGTCATGCACATAGCACG
CAGCTGGCCGTGAACGCGTACCAGATGAAGGACCAGCCCGCGCGCTGGTCCAAGGTCGAA
AGTTTCTTGACGCGGGAGATGGCCGACCGCGCGTTCAGCGTCGCATCCGAGTCGATGAGC
CGACTCAACGTCAACGGCGCCAAGCTCATGCACAAGCACGGCGTGACCTCAGCGACAGAC
GTCACGGGCTTTGGCATCCTCGGGCACGCCCAAAACATGGCAACCTCGCAAAAGGCCGAC
GTGGATTTTGAGCTGCACACGCTGCCGGTCATCAAGGACATGCTCGCGGTGAACGAGGCG
TTCAACGGCCAATGGCGACTTGAGCTCGGCTTCTCGTCCGAGACGTCGGGCGGTCTCCTT
GTCTCGATCGACGCCGACCGCGCT
//
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	match	20193	21257	144.07	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	cds	20193	20300	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	intron	20301	20343	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	cds	20344	20590	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	intron	20591	20641	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	cds	20642	20922	0.00	+	2	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	intron	20923	20972	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	cds	20973	21028	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	intron	21029	21085	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30140)	GeneWise	cds	21086	21257	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122483,30140)-genewise-prediction-1
//
