
genewise output
Score 150.17 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000056_1.0   62 GLDSSVIALKH----DLFLVQSVDFFYPLIDDPFML              
                     G+DSSV+ +KH    DL+++ + DFFYPL+ DP++               
                     GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQ              
gi|288565291|gb20193 gagtaggaaaccatggctaataagtttccgcgctgc              
                     gtacgttataacatgatattcccattacttaacata              
                     cgcgcccgcgccgtgcccgtccctccctgcatccca              


SPP00000056_1.0   94                        GKIALANVVSDVFAVGATEIDQIKLI 
                                            G+IA ANV+SD++A+G TE+D + +I 
                                            GRIACANVLSDLYAMGVTEVDTMLMI 
gi|288565291|gb20301 GTACTTT  Intron 1   TAGgcagtgagctgctgaggagggaacaa 
                     <0-----[20301:20343]-0>ggtcgcattcatactgtcatactttt 
                                            cctccccgcgtgtggcccaccggcgc 


SPP00000056_1.0  120 VTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGG 
                     +     +T+ ER+VV  +++ GF + A+     V  G    NPW ++GG 
                     LGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGG 
gi|288565291|gb20422 cggtcaaagcgcgggaaccacgtagcgcgggaagaggcagaactcaggg 
                     tgtcgctcatagattccattagtaatcgacgcatcggacttacgcttgg 
                     cctgcgggccgcccggggcccccccttcatccccgccgccgcgggtccc 


SPP00000056_1.0  169 AASAVCH                          SELIMPYNAQPGDALV 
                      A +V                            SE+I P NA  G  LV 
                     VAMSVRA          R:E[gag]        SEIIRPENATAGQMLV 
gi|288565291|gb20569 ggaagcgGGTAGTCC  Intron 2   TAGAGtgaaccgagaggcacg 
                     tctgtgc <1-----[20591:20641]-1>  cattgcaacccgattt 
                     ccgttcc                          cgctagacgccaagcg 


SPP00000056_1.0  193 LTKPL                          TQLATNAYIWMGEQQSDS 
                     LTKPL                          TQLA NAY    + Q    
                     LTKPL           G:G[ggc]       TQLAVNAY--QMKDQPAR 
gi|288565291|gb20692 caaccGGGTGCGCT  Intron 3   TAGCaccggagt  caagccgc 
                     tcact  <2-----[20709:20762]-2> catctaca  ataaaccg 
                     ccgcc                          gggcgcgc  gggcgcgc 


SPP00000056_1.0  217 WAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKK             
                     W+++   +T    ++ + +A ESMSRLN  GA+LM K             
                     WSKVESFLTREMADRAFSVASESMSRLNVNGAKLMHK             
gi|288565291|gb20812 ttaggattacgaggcgtaggtgtaaccagaggacaca             
                     gcatagttcgatcagctgtccactggtatagcattaa             
                     gcgcatcgggggcccgcccacgggcaccccccgcgcg             


SPP00000056_1.0  254                        YGAHAATDVTGFGLYGHA         
                                            +G  +ATDVTGFG+ GHA         
                                            HGVTSATDVTGFGILGHA         
gi|288565291|gb20923 GTATTAT  Intron 4   TAGcggatgaggagtgacgcg         
                     <0-----[20923:20972]-0>agtccccatcgtgttgac         
                                            ccgcagaccgctcccgcc         


SPP00000056_1.0  272                           NLASHQTADVDFHLDTLPIIKNV 
                                               N+A+ Q ADVDF L TLP+IK++ 
                                E:Q[caa]       NMATSQKADVDFELHTLPVIKDM 
gi|288565291|gb21027 CAGTACGGC  Intron 5   TAGAaagatcaggggtgccaccgaaga 
                       <2-----[21029:21085]-2> atcccaacatatatactcttaat 
                                               cgacgagccgttggcgggccgcg 


SPP00000056_1.0  296 REIAETLGRGAKLLAGKAVETSGGLLICLPREAA                
                       + E      +L  G + ETSGGLL+ +  + A                
                     LAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA                
gi|288565291|gb21156 cggaggtagctccgcgtttgatggccgtagggcg                
                     tctaactagaggtatgtccaccggtttctacagc                
                     cggcggcccagatgcccgcgggctctcgccccct                


//
Making a E in phase 1 intron
Making a G in phase 2 intron
Making a Q in phase 2 intron
>gi|288565291|gb|GG743906.1|:subseq(122483,30116).pep
GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQGRIACANVLSDLYAMGVTEVDTML
MILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGGVAMSVRAES
EIIRPENATAGQMLVLTKPLGTQLAVNAYQMKDQPARWSKVESFLTREMADRAFSVASES
MSRLNVNGAKLMHKHGVTSATDVTGFGILGHAQNMATSQKADVDFELHTLPVIKDMLAVN
EAFNGQWRLELGFSSETSGGLLVSIDADRA
//
>gi|288565291|gb|GG743906.1|:subseq(122483,30116).[20193:21257].sp
GGCATGGACTCGAGCGTCGTCAAGATCAAGCACCCCAAGTTTGGGGACCTCTACATGATT
TCCACCACCGATTTCTTCTACCCTCTGGTCCAAGATCCCTACGTCCAAGGCCGCATTGCC
TGCGCCAACGTGCTCTCGGATCTGTATGCGATGGGCGTCACCGAAGTCGACACGATGCTC
ATGATCCTCGGCGTTTCGCGCACGATGACGGACCTCGAGCGCGACGTCGTGACGACGCAG
CTCATCCACGGCTTCAACGACCTTGCTCGCGAAGCTGGCACCAACGTCACGGGCGGCCAG
ACCGTCATGAACCCGTGGCCGATTGTCGGCGGCGTCGCCATGAGTGTTCGCGCCGAGTCC
GAGATCATTCGACCGGAAAACGCGACCGCCGGACAAATGCTCGTGCTCACCAAGCCCCTC
GGCACGCAGCTGGCCGTGAACGCGTACCAGATGAAGGACCAGCCCGCGCGCTGGTCCAAG
GTCGAAAGTTTCTTGACGCGGGAGATGGCCGACCGCGCGTTCAGCGTCGCATCCGAGTCG
ATGAGCCGACTCAACGTCAACGGCGCCAAGCTCATGCACAAGCACGGCGTGACCTCAGCG
ACAGACGTCACGGGCTTTGGCATCCTCGGGCACGCCCAAAACATGGCAACCTCGCAAAAG
GCCGACGTGGATTTTGAGCTGCACACGCTGCCGGTCATCAAGGACATGCTCGCGGTGAAC
GAGGCGTTCAACGGCCAATGGCGACTTGAGCTCGGCTTCTCGTCCGAGACGTCGGGCGGT
CTCCTTGTCTCGATCGACGCCGACCGCGCT
//
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	match	20193	21257	154.17	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	20193	20300	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	intron	20301	20343	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	20344	20590	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	intron	20591	20641	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	20642	20708	0.00	+	2	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	intron	20709	20762	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	20763	20922	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	intron	20923	20972	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	20973	21028	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	intron	21029	21085	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122483,30116)	GeneWise	cds	21086	21257	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122483,30116)-genewise-prediction-1
//
