
genewise output
Score 312.97 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000056_1.0    1 MFKPESYGLSHDFRLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKD 
                     +F P   GL   F LT FS L+G G K+PQ    +LL   Y E + + D 
                     IFDPVDLGLDPSFTLTDFSALKGCGCKLPQA---KLLG--YLEDIAN-D 
gi|299737255|gb20000 atgcggcgcgcttacagtagcagtgtatccg   atcg  tcggaga g 
                     ttactatgtacctctcatgctaggggatcac   attg  ataatca a 
                     ccccgtttttggcaggtccgggccacagggg   agca  cgatccc c 


SPP00000056_1.0   50 GKGPNKEEGVGIGLDSSVIALKH--DLFLVQSVDFFYPLIDDPFMLGKI 
                      K PN+  G    +DSSV+ + H  DL+++ + DFF+P ++DP++ GKI 
                     LK-PNETPG----MDSSVVKISHGKDLYMISTTDFFFPSVEDPYVQGKI 
gi|299737255|gb20129 ta cagacg    agtaggaaacgagttaataagtttctgggctgcgaa 
                     ta caaccg    tacgttatgagaatattcccatttcctaacatagat 
                     gg atggtc    gcgccggctccgtgcgcgggtcccgcgacgctgcgc 


SPP00000056_1.0   97 ALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVMQGFLEA 
                     A ANV+SDV+A+G TE+D + +I+    +++E+ER+VV  ++++GF +  
                     ACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKERDVVTTQMIRGFNDL 
gi|299737255|gb20261 gtgagctggtgaggagggaacaacggtcgaagagcgggaacaacgtagc 
                     cgcattcatactgtcatactttttgtggatgaaagattccattggtaat 
                     gcgcgcgcgcggcggggcggcgcccgtgcgcgggctcgggggccgtctt 


SPP00000056_1.0  146 AKACNAPVQIGSIAENPWCVIGGAASAVCH                    
                     A+     V  G    NPW ++GG A +V                      
                     ARKAETNVTGGQTVMNPWPIVGGVAMSVRS                    
gi|299737255|gb20408 gcaggaagaggcagaactcagggggaagca                    
                     cgacacatcggacttacgcttggtctgtgg                    
                     gcggggcggtgggcgcaggttacccgcgcc                    


SPP00000056_1.0  176                           SELIMPYNAQPGDALVLTKPLGT 
                                               SE+I P NAQ GD ++LTK LGT 
                               R:E[gaa]        SEIIRPVNAQVGDVIILTKALGT 
gi|299737255|gb20498 GGTACGTC  Intron 1   TAGAAagaaccgagcggggaacaagtga 
                      <1-----[20499:20595]-1>  gattgctacatgattttcactgc 
                                               cgctccgcgggccgccccgggcg 


SPP00000056_1.0  200 QLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGA 
                     Q+A N + W   ++ + W ++ +  TV D E  + +A ESMSRLN   A 
                     QVAVNLFQW--RKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAA 
gi|299737255|gb20667 cgggactct  caccgctccgggggagcgggcgtgagtgtaaccacagg 
                     atctattag  gagcaggagtcattctaacaagtctccactggtatacc 
                     accgcgcag  cgctgcgacgacggccgccgcgcgggcgcgtgccgcca 


SPP00000056_1.0  249 ELMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLPIIKNVRE 
                      LM KYGAH+ATDVTGFG+  HA N A  QT DV+F + TLPII+++ + 
                     RLMHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVK 
gi|299737255|gb20808 ccacatggctgaggagtgacgcgcacgatcacggatgacaccaaccaga 
                     gttaaagcacccatcgtgttcacgaacacacgatatatactcttaatta 
                     gcgcgccgcagcccgcctcggcgtcgcaggcccgctgccgggccgcgcg 


SPP00000056_1.0  298 IAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEYRRCTKHEAWI 
                     + ET+G   +LL G A ETSGGLL+CLP E A  +  E R      AW+ 
                     VNETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAELRALDGKPAWV 
gi|299737255|gb20955 gagaagattcccggtgggatggccttccggcgggtaggccgtggacgtg 
                     taactgactgttagtccaccggtttgtccaacacatcatgctagaccgt 
                     gcggcccgctgcgtcgcgggcggggcgcggtgcgccgggtagccgcggc 


SPP00000056_1.0  347 VGHVEKGARGVKMNPNLNILSV                            
                     VG V  G++  ++  N  IL V                            
                     VGRVVAGSKDARIVANPTILEV                            
gi|299737255|gb21102 ggcggggaaggcaggacaacgg                            
                     tggttcggaacgttcaccttat                            
                     ccccccccgccccgccggccac                            


//
Making a E in phase 1 intron
>gi|299737255|gb|GL376634.1|:subseq(770913,30491).pep
IFDPVDLGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIANDLKPNETPGMDSSVVKIS
HGKDLYMISTTDFFFPSVEDPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRDMSEK
ERDVVTTQMIRGFNDLARKAETNVTGGQTVMNPWPIVGGVAMSVRSESEIIRPVNAQVGD
VIILTKALGTQVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAARLM
HKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKVNETIGNSFRLLEG
FAAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVGRVVAGSKDARIVANPTILEV
//
>gi|299737255|gb|GL376634.1|:subseq(770913,30491).[20000:21167].sp
ATCTTCGACCCCGTGGATCTTGGTCTTGATCCGTCGTTCACACTGACGGATTTCAGCGCG
CTGAAGGGCTGCGGATGCAAATTGCCGCAGGCGAAATTGCTCGGATACCTGGAAGATATC
GCCAACGACTTGAAGCCAAATGAGACGCCTGGCATGGACTCGAGCGTCGTGAAGATCAGT
CACGGCAAGGATTTGTACATGATCTCGACGACGGATTTCTTCTTCCCGTCCGTGGAAGAC
CCGTACGTTCAGGGCAAGATCGCGTGCGCGAACGTGCTCTCGGACGTGTACGCGATGGGC
GTGACGGAGGTGGACACGATGCTCATGATCCTCGGCGTGTGTCGGGACATGAGCGAGAAG
GAGCGCGATGTCGTGACGACGCAGATGATCCGCGGGTTTAACGATCTTGCGCGCAAGGCG
GAGACGAACGTGACGGGTGGGCAGACGGTCATGAACCCATGGCCGATTGTTGGAGGCGTC
GCCATGAGCGTGCGCAGCGAAAGCGAGATCATTCGCCCCGTGAACGCGCAGGTGGGCGAC
GTGATCATCCTCACCAAGGCGTTGGGCACGCAAGTCGCCGTGAACCTGTTCCAATGGCGC
AAGCGCCCTGAGCGCTGGCAACGCGTGGCAGACGTGGTGACCGTCCAGGACGCCGAGCAC
GGGTTCGCGATGGCGTCCGAGTCCATGAGTCGGCTCAACCTGAACGCCGCACGGCTCATG
CACAAGTACGGCGCGCACTCAGCGACCGACGTCACGGGCTTCGGTATCCTGGCGCACGCG
CGTAACCAGGCCAAATCGCAGACCCGCGACGTGAACTTTGAGATCCACACGCTGCCGATC
ATCCAGCACATGGTCAAGGTGAACGAGACGATCGGCAACTCGTTCCGTCTGCTCGAGGGT
TTCGCGGCCGAGACGTCGGGCGGGCTGCTGTTGTGCCTGCCCGCGGAGCATGCGGACGCG
TACATCGCGGAGCTGCGTGCATTGGACGGCAAGCCCGCGTGGGTCGTCGGCCGCGTCGTC
GCCGGCAGCAAGGACGCCCGCATCGTGGCCAACCCGACGATCCTCGAAGTC
//
gi|299737255|gb|GL376634.1|:subseq(770913,30491)	GeneWise	match	20000	21167	320.95	+	.	gi|299737255|gb|GL376634.1|:subseq(770913,30491)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770913,30491)	GeneWise	cds	20000	20498	0.00	+	0	gi|299737255|gb|GL376634.1|:subseq(770913,30491)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770913,30491)	GeneWise	intron	20499	20595	0.00	+	.	gi|299737255|gb|GL376634.1|:subseq(770913,30491)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770913,30491)	GeneWise	cds	20596	21167	0.00	+	2	gi|299737255|gb|GL376634.1|:subseq(770913,30491)-genewise-prediction-1
//
