genewise output Score 348.09 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000032_1.0 4 RESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQE R+ FNPE+ L +RLT+FT+LKG GCKVPQ L KLLE + N RKRFNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNA supercontig_1.-21493 cactacgacgccggtccaataccagtgtagccagccaccggtcgataag gagtacactgtccaggtcatcataggggatcaaattattattgcacaac cggctaggccgtccgcgcgccgcgctacggcgacgcggcaccagcgccc SPP00000032_1.0 53 ---DEQFLGAVMPR --LGIGMDT EQ + A P +G+G+D+ VAGSEQQIAAPTPT -:N[aat] GTIGVGLDS supercontig_1.-21346 gggtgccaggcacaAGTGGTGG Intron 1 CAGATgaagggcga tcgcaaatcccccc <1-----[21303:21253]-1> gctgtgtag gttaaaaccgatgg acctttccc SPP00000032_1.0 71 CVIPLRHGGLSLVQTTD IYPIVD CV RH GL LVQTTD ++P+++ CVTETRHPGLYLVQTTD Y:F[ttc] FFPLIE supercontig_1.-21223 tgagacccgctcgcaagTTGTGAGTT Intron 2 AAGCttccag gtcacgacgtattacca <2-----[21170:21029]-2> ttctta tccgggtgtgtccgccc ccgctg SPP00000032_1.0 95 DPYMM GRIACANVLSDLYAMGVTECD DPY+M GRIACANVLSDLYAMGV+ECD DPYQM GRIACANVLSDLYAMGVSECD supercontig_1.-21009 gctcaGTCAGTG Intron 3 TAGgcagtgagtagttgaggtgtg acaat<0-----[20994:20888]-0>ggtcgcattgatactgtcaga ttcag tatgccttgctgcagcgcgct SPP00000032_1.0 121 NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPW NMLMLLGVS +T E V PL+++GF D +EAGT+V GGQTV NPW NMLMLLGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVLGGQTVKNPW supercontig_1.-20824 aacaccggaaatacggtgagaccgaagtcgctcgggaagcggcagaact atttttgtgcctccaactttcctttagtaatgaacgcattggactaacg cgcggctaccgggagatctcggtcgactccgcagcaccgtcgagcatcg SPP00000032_1.0 170 IVLGGVATTVCQPNEFIMP NAVP ++LGGVAT+V +E+IMP A FLLGGVATSVVGRHEMIMP D:D[gat] GAKS supercontig_1.-20677 ttcggggatgggccgaaacGGTACACG Intron 4 CAGATggaa tttggtcccttggaatttc <1-----[20619:20536]-1> gcag tgcccccattctttagcga caac SPP00000032_1.0 194 GDVLVLTKPLGTQVAVAVHQW-LDIPEKWNKIKLVVTQEDVELAYQEAM GDVLVLTKPLG Q+AV HQW L PE++ ++ V+T E V AY+ A+ GDVLVLTKPLGNQLAVNAHQWMLTDPERYKRLDGVLTNEQVIEAYEHAI supercontig_1.-20521 gggcgcaaccgaccggagcctacagcgctaccgggcaagcgaggtgcga gattttcactgaatctacaagttcacagaagtagttcaaattacaaact ccccgccggtatagcctccggggatcaacgcgcctcgcggtcaccatct SPP00000032_1.0 242 MNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVI NM RL+R AA LM F AHAATD+TGFGILGHA+NLA+ Q++ V+F I TNMTRLSRVAARLMREFGAHAATDVTGFGILGHARNLARSQKDSVNFEI supercontig_1.-20374 aaaaccacgggccacgtggcggaggagtgacgcgcacgcacagagatga catcgtggtccgttgatgcacccatcgtgttgacgatcggaaagtatat gcgatgccgcccggaacttctcgtgtttatgtccgcttttggcccttat SPP00000032_1.0 291 HNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICL---------PR PVL M A+ +A +F L+ GT ETSGGLLI L R DVFPVLRHMIAMERAT-PVFHLLEGTSAETSGGLLIALGPSPDGKLDAR supercontig_1.-20227 ggtcgcccaagagcga cgtcccggatggatggccagcgctcggacggc attcttgattctagcc cttattagcccaccggtttctgcccagatacg tccaggccgtcggccc ccctgggctacggctatctggtcgatcattga SPP00000032_1.0 331 EQAARFCAEIKSPKYGEGHQAWIIGIVEKG A R+C E+ + G QA+IIG V +G ANAQRYCDEL--ARQDRGFQAYIIGRVVEG supercontig_1.-20083 gagccttggc gccgcgtcgtaagcgggg cacagagaat cgaaggtacattggttag accgctccgg ccgttccactctctatat // Making a N in phase 1 intron Making a F in phase 2 intron Making a D in phase 1 intron >supercontig_1.1:subseq(1134478,31493).pep RKRFNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNAVAGSEQQIAAP TPTNGTIGVGLDSCVTETRHPGLYLVQTTDFFFPLIEDPYQMGRIACANVLSDLYAMGVS ECDNMLMLLGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVLGGQTVKNPWFLLGGVAT SVVGRHEMIMPDGAKSGDVLVLTKPLGNQLAVNAHQWMLTDPERYKRLDGVLTNEQVIEA YEHAITNMTRLSRVAARLMREFGAHAATDVTGFGILGHARNLARSQKDSVNFEIDVFPVL RHMIAMERATPVFHLLEGTSAETSGGLLIALGPSPDGKLDARANAQRYCDELARQDRGFQ AYIIGRVVEG // >supercontig_1.1:subseq(1134478,31493).[21493:19998].sp CGCAAGCGGTTCAATCCAGAGACGCTCGGCCTGCCTGCCGACTGGCGCCTGACCAAGTTC ACCCAGCTCAAGGGCTGTGGATGCAAGGTGCCCCAGAAAGACCTGCTCAAGCTGCTCGAA GTCTTCCGAGCGAACTCGAACAACGCCGTGGCTGGTTCAGAACAACAAATCGCCGCGCCA ACTCCGACGAATGGAACCATCGGTGTTGGTCTCGACAGCTGTGTCACCGAGACGCGGCAT CCGGGTCTGTATCTCGTCCAGACCACCGACTTCTTCTTCCCGCTCATTGAGGATCCTTAC CAAATGGGTCGAATTGCGTGCGCCAATGTTTTGAGCGATTTGTACGCAATGGGCGTGTCC GAGTGCGATAACATGCTCATGCTGCTCGGTGTAAGCACCACGTTGACGCCAGAGGAATCT GTCATTGTCACGCCGCTTGTCATGAAAGGCTTTCACGACCTGTGCCAAGAGGCCGGAACC AACGTGCTTGGCGGGCAAACGGTCAAAAATCCCTGGTTTTTGCTCGGCGGCGTCGCCACA TCTGTTGTCGGTCGTCATGAAATGATCATGCCAGATGGCGCAAAAAGCGGCGACGTCCTC GTGCTCACCAAGCCGCTTGGAAATCAACTGGCCGTCAATGCCCACCAGTGGATGCTGACA GATCCCGAACGATACAAGCGCCTGGACGGCGTTCTCACGAACGAGCAGGTTATCGAAGCC TACGAACATGCCATTACGAACATGACACGTCTGAGCCGCGTGGCCGCCCGCCTGATGCGA GAATTCGGTGCTCACGCTGCCACGGATGTGACTGGTTTTGGAATTCTGGGTCACGCCCGG AACCTTGCTCGTAGTCAGAAGGACAGCGTCAATTTTGAAATTGATGTCTTCCCAGTGCTG CGCCACATGATTGCCATGGAGCGCGCCACCCCCGTCTTCCATCTGCTGGAGGGCACTTCA GCCGAGACGTCCGGTGGACTTCTCATTGCGCTGGGTCCCTCGCCAGATGGCAAACTTGAT GCGCGAGCAAACGCCCAGCGCTATTGCGACGAGCTGGCCCGCCAGGATCGTGGCTTCCAA GCCTATATCATTGGCCGTGTAGTTGAAGGT // supercontig_1.1:subseq(1134478,31493) GeneWise match 21493 20000 360.07 - . supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise cds 21493 21304 0.00 - 0 supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise intron 21303 21253 0.00 - . supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise cds 21252 21171 0.00 - 2 supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise intron 21170 21029 0.00 - . supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise cds 21028 20995 0.00 - 1 supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise intron 20994 20888 0.00 - . supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise cds 20887 20620 0.00 - 0 supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise intron 20619 20536 0.00 - . supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 supercontig_1.1:subseq(1134478,31493) GeneWise cds 20535 20000 0.00 - 2 supercontig_1.1:subseq(1134478,31493)-genewise-prediction-1 //