genewise output Score 312.46 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000055_1.0 23 RRPFDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLV---------- R+ F+P L A +RLT+F LKG CKVP++ L KL+ RKRFNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNA supercontig_1.-21496 cactacgacgccggtccaataccagtgtagccagccaccggtcgataag gagtacactgtccaggtcatcataggggatcaaattattattgcacaac cggctaggccgtccgcgcgccgcgctacggcgacgcggcaccagcgccc SPP00000055_1.0 62 --SSLQQDYMQDPDQ--PFMPMSS--------PRIGIGLDCSVIPLRHG S QQ P +P SS IG+GLD V RH VAGSEQQIAAPTPTSGGAAVPASSIPAAITADGTIGVGLDSCVTETRHP supercontig_1.-21349 gggtgccaggcacaagggggcgttacggaagggaagggcgatgagaccc tcgcaaatccccccgggcctcccctccctccagctgtgtaggtcacgac gttaaaaccgatggttttaggggccggactatacctttccctccgggtg SPP00000055_1.0 99 GLCMVQTTD FYPIVDDPYMM GL +VQTTD F+P+++DPY+M GLYLVQTTD F:F[ttc] FFPLIEDPYQM supercontig_1.-21202 gctcgcaagTTGTGAGTT Intron 1 AAGCttccaggctca gtattacca <2-----[21173:21032]-2> ttcttaacaat tgtccgccc ccgctgttcag SPP00000055_1.0 120 GKIACANVLSDLYAMGVTEVDNMLML G+IACANVLSDLYAMGV+E DNMLML GRIACANVLSDLYAMGVSECDNMLML supercontig_1.-20997 GTCAGTG Intron 2 TAGgcagtgagtagttgaggtgtgaacac <0-----[20997:20891]-0>ggtcgcattgatactgtcagaatttt tatgccttgctgcagcgcgctcgcgg SPP00000055_1.0 146 LAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGG L VST + +E +V PL+M+GF D EAGT+V GG +V NPW +GG LGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVLGGQTVKNPWFLLGG supercontig_1.-20812 cggaaatacggtgagaccgaagtcgctcgggaagcggcagaactttcgg tgtgcctccaactttcctttagtaatgaacgcattggactaacgtttgg ctaccgggagatctcggtcgactccgcagcaccgtcgagcatcgtgccc SPP00000055_1.0 195 VATTICQQNEFIVP NAVVGDVLV VAT++ ++E+I+P A GDVLV VATSVVGRHEMIMP D:D[gat] GAKSGDVLV supercontig_1.-20665 ggatgggccgaaacGGTACACG Intron 3 CAGATggaagggcg tcccttggaatttc <1-----[20622:20539]-1> gcaggattt ccattctttagcga caacccccg SPP00000055_1.0 219 LTKALGTQVAVNAHQW-LDQSERWNRIKLVVSEEDVRKAYHRAMDSMSR LTK LG Q+AVNAHQW L ER+ R+ V++ E V +AY A+ +M+R LTKPLGNQLAVNAHQWMLTDPERYKRLDGVLTNEQVIEAYEHAITNMTR supercontig_1.-20509 caaccgaccggagcctacagcgctaccgggcaagcgaggtgcgaaaaac tcactgaatctacaagttcacagaagtagttcaaattacaaactcatcg ccggtatagcctccggggatcaacgcgcctcgcggtcaccatctgcgat SPP00000055_1.0 267 LNRVAARLMHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPV L+RVAARLM ++ AH ATDVTGFG+LGHA+ LA QK+ V+F I PV LSRVAARLMREFGAHAATDVTGFGILGHARNLARSQKDSVNFEIDVFPV supercontig_1.-20362 cacgggccacgtggcggaggagtgacgcgcacgcacagagatgaggtcg tggtccgttgatgcacccatcgtgttgacgatcggaaagtatatattct gccgcccggaacttctcgtgtttatgtccgcttttggcccttattccag SPP00000055_1.0 316 IAKMAAVAKACGNMFQLLQGHSAETSGGLLICL---------PREQAAA + M A+ +A +F LL+G SAETSGGLLI L R A LRHMIAMERAT-PVFHLLEGTSAETSGGLLIALGPSPDGKLDARANAQR supercontig_1.-20215 cccaagagcga cgtcccggatggatggccagcgctcggacggcgagcc tgattctagcc cttattagcccaccggtttctgcccagatacgcacag gccgtcggccc ccctgggctacggctatctggtcgatcattgaaccgc SPP00000055_1.0 356 YCKDIEKQE-GCQAWIIGIVEKGS YC ++ +Q+ G QA+IIG V +G+ YCDELARQDRGFQAYIIGRVVEGT supercontig_1.-20071 ttggcgccgcgtcgtaagcgggga agaatcgaaggtacattggttagc tccggccgttccactctctatatg // Making a F in phase 2 intron Making a D in phase 1 intron >supercontig_1.1:subseq(1134475,31496).pep RKRFNPETLGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNNAVAGSEQQIAAP TPTSGGAAVPASSIPAAITADGTIGVGLDSCVTETRHPGLYLVQTTDFFFPLIEDPYQMG RIACANVLSDLYAMGVSECDNMLMLLGVSTTLTPEESVIVTPLVMKGFHDLCQEAGTNVL GGQTVKNPWFLLGGVATSVVGRHEMIMPDGAKSGDVLVLTKPLGNQLAVNAHQWMLTDPE RYKRLDGVLTNEQVIEAYEHAITNMTRLSRVAARLMREFGAHAATDVTGFGILGHARNLA RSQKDSVNFEIDVFPVLRHMIAMERATPVFHLLEGTSAETSGGLLIALGPSPDGKLDARA NAQRYCDELARQDRGFQAYIIGRVVEGT // >supercontig_1.1:subseq(1134475,31496).[21496:19998].sp CGCAAGCGGTTCAATCCAGAGACGCTCGGCCTGCCTGCCGACTGGCGCCTGACCAAGTTC ACCCAGCTCAAGGGCTGTGGATGCAAGGTGCCCCAGAAAGACCTGCTCAAGCTGCTCGAA GTCTTCCGAGCGAACTCGAACAACGCCGTGGCTGGTTCAGAACAACAAATCGCCGCGCCA ACTCCGACGAGTGGTGGTGCTGCAGTGCCGGCGTCGTCCATCCCGGCGGCAATCACTGCA GATGGAACCATCGGTGTTGGTCTCGACAGCTGTGTCACCGAGACGCGGCATCCGGGTCTG TATCTCGTCCAGACCACCGACTTCTTCTTCCCGCTCATTGAGGATCCTTACCAAATGGGT CGAATTGCGTGCGCCAATGTTTTGAGCGATTTGTACGCAATGGGCGTGTCCGAGTGCGAT AACATGCTCATGCTGCTCGGTGTAAGCACCACGTTGACGCCAGAGGAATCTGTCATTGTC ACGCCGCTTGTCATGAAAGGCTTTCACGACCTGTGCCAAGAGGCCGGAACCAACGTGCTT GGCGGGCAAACGGTCAAAAATCCCTGGTTTTTGCTCGGCGGCGTCGCCACATCTGTTGTC GGTCGTCATGAAATGATCATGCCAGATGGCGCAAAAAGCGGCGACGTCCTCGTGCTCACC AAGCCGCTTGGAAATCAACTGGCCGTCAATGCCCACCAGTGGATGCTGACAGATCCCGAA CGATACAAGCGCCTGGACGGCGTTCTCACGAACGAGCAGGTTATCGAAGCCTACGAACAT GCCATTACGAACATGACACGTCTGAGCCGCGTGGCCGCCCGCCTGATGCGAGAATTCGGT GCTCACGCTGCCACGGATGTGACTGGTTTTGGAATTCTGGGTCACGCCCGGAACCTTGCT CGTAGTCAGAAGGACAGCGTCAATTTTGAAATTGATGTCTTCCCAGTGCTGCGCCACATG ATTGCCATGGAGCGCGCCACCCCCGTCTTCCATCTGCTGGAGGGCACTTCAGCCGAGACG TCCGGTGGACTTCTCATTGCGCTGGGTCCCTCGCCAGATGGCAAACTTGATGCGCGAGCA AACGCCCAGCGCTATTGCGACGAGCTGGCCCGCCAGGATCGTGGCTTCCAAGCCTATATC ATTGGCCGTGTAGTTGAAGGTACG // supercontig_1.1:subseq(1134475,31496) GeneWise match 21496 20000 339.42 - . supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise cds 21496 21174 0.00 - 0 supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise intron 21173 21032 0.00 - . supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise cds 21031 20998 0.00 - 1 supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise intron 20997 20891 0.00 - . supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise cds 20890 20623 0.00 - 0 supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise intron 20622 20539 0.00 - . supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 supercontig_1.1:subseq(1134475,31496) GeneWise cds 20538 20000 0.00 - 2 supercontig_1.1:subseq(1134475,31496)-genewise-prediction-1 //