
genewise output
Score 214.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000032_1.0   67 GMDTCVIPLRH---GGLSLVQTTDYIYPIVDDPYMM              
                     GMD+ V+ ++H   G L ++ TTD++YP+V DPY++              
                     GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQ              
gi|288565291|gb20202 gagtaggaaaccatggctaataagtttccgcgctgc              
                     gtacgttataacatgatattcccattacttaacata              
                     cgcgcccgcgccgtgcccgtccctccctgcatccca              


SPP00000032_1.0  100                        GRIACANVLSDLYAMGVTECDNMLML 
                                            GRIACANVLSDLYAMGVTE D MLM+ 
                                            GRIACANVLSDLYAMGVTEVDTMLMI 
gi|288565291|gb20310 GTACTTT  Intron 1   TAGgcagtgagctgctgaggagggaacaa 
                     <0-----[20310:20352]-0>ggtcgcattcatactgtcatactttt 
                                            cctccccgcgtgtggcccaccggcgc 


SPP00000032_1.0  126 LGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGG 
                     LGVS  MTD ERD V   +I GF D A EAGT+VTGGQTV+NPW ++GG 
                     LGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGG 
gi|288565291|gb20431 cggtcaaagcgcgggaaccacgtagcgcgggaagaggcagaactcaggg 
                     tgtcgctcatagattccattagtaatcgacgcatcggacttacgcttgg 
                     cctgcgggccgcccggggcccccccttcatccccgccgccgcgggtccc 


SPP00000032_1.0  175 VATTVCQ                          NEFIMPDNAVPGDVLV 
                     VA +V                            +E+I P+NA  G +LV 
                     VAMSVRA          P:E[gag]        SEIIRPENATAGQMLV 
gi|288565291|gb20578 ggaagcgGGTAGTCC  Intron 2   TAGAGtgaaccgagaggcacg 
                     tctgtgc <1-----[20600:20650]-1>  cattgcaacccgattt 
                     ccgttcc                          cgctagacgccaagcg 


SPP00000032_1.0  199 LTKPL                          TQVAVAVHQWLDIPEKWN 
                     LTKPL                          TQ+AV  +Q  D P +W+ 
                     LTKPL           G:G[ggc]       TQLAVNAYQMKDQPARWS 
gi|288565291|gb20701 caaccGGGTGCGCT  Intron 3   TAGCaccggagtcaagccgctt 
                     tcact  <2-----[20718:20771]-2> catctacaataaaccggc 
                     ccgcc                          gggcgcgcgggcgcgcgc 


SPP00000032_1.0  223 KIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHT               
                     K++  +T+E  + A+  A  +M+RLN   A LMH                
                     KVESFLTREMADRAFSVASESMSRLNVNGAKLMHK               
gi|288565291|gb20827 aggattacgaggcgtaggtgtaaccagaggacaca               
                     atagttcgatcagctgtccactggtatagcattaa               
                     gcatcgggggcccgcccacgggcaccccccgcgcg               


SPP00000032_1.0  258                        FNAHAATDITGFGILGHA         
                                                +ATD+TGFGILGHA         
                                            HGVTSATDVTGFGILGHA         
gi|288565291|gb20932 GTATTAT  Intron 4   TAGcggatgaggagtgacgcg         
                     <0-----[20932:20981]-0>agtccccatcgtgttgac         
                                            ccgcagaccgctcccgcc         


SPP00000032_1.0  276                           NLAKQQRNEVSFVIHNLPVLAKM 
                                               N+A  Q+ +V F +H LPV+  M 
                                Q:Q[caa]       NMATSQKADVDFELHTLPVIKDM 
gi|288565291|gb21036 CAGTACGGC  Intron 5   TAGAaagatcaggggtgccaccgaaga 
                       <2-----[21038:21094]-2> atcccaacatatatactcttaat 
                                               cgacgagccgttggcgggccgcg 


SPP00000032_1.0  300 AAVSKACGNMFGLMHGTCPETSGGLLICLPREQA                
                      AV++A   ++ L  G   ETSGGLL+ +  ++A                
                     LAVNEAFNGQWRLELGFSSETSGGLLVSIDADRA                
gi|288565291|gb21165 cggaggtagctccgcgtttgatggccgtagggcg                
                     tctaactagaggtatgtccaccggtttctacagc                
                     cggcggcccagatgcccgcgggctctcgccccct                


//
Making a E in phase 1 intron
Making a G in phase 2 intron
Making a Q in phase 2 intron
>gi|288565291|gb|GG743906.1|:subseq(122474,31427).pep
GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQGRIACANVLSDLYAMGVTEVDTML
MILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGGVAMSVRAES
EIIRPENATAGQMLVLTKPLGTQLAVNAYQMKDQPARWSKVESFLTREMADRAFSVASES
MSRLNVNGAKLMHKHGVTSATDVTGFGILGHAQNMATSQKADVDFELHTLPVIKDMLAVN
EAFNGQWRLELGFSSETSGGLLVSIDADRA
//
>gi|288565291|gb|GG743906.1|:subseq(122474,31427).[20202:21266].sp
GGCATGGACTCGAGCGTCGTCAAGATCAAGCACCCCAAGTTTGGGGACCTCTACATGATT
TCCACCACCGATTTCTTCTACCCTCTGGTCCAAGATCCCTACGTCCAAGGCCGCATTGCC
TGCGCCAACGTGCTCTCGGATCTGTATGCGATGGGCGTCACCGAAGTCGACACGATGCTC
ATGATCCTCGGCGTTTCGCGCACGATGACGGACCTCGAGCGCGACGTCGTGACGACGCAG
CTCATCCACGGCTTCAACGACCTTGCTCGCGAAGCTGGCACCAACGTCACGGGCGGCCAG
ACCGTCATGAACCCGTGGCCGATTGTCGGCGGCGTCGCCATGAGTGTTCGCGCCGAGTCC
GAGATCATTCGACCGGAAAACGCGACCGCCGGACAAATGCTCGTGCTCACCAAGCCCCTC
GGCACGCAGCTGGCCGTGAACGCGTACCAGATGAAGGACCAGCCCGCGCGCTGGTCCAAG
GTCGAAAGTTTCTTGACGCGGGAGATGGCCGACCGCGCGTTCAGCGTCGCATCCGAGTCG
ATGAGCCGACTCAACGTCAACGGCGCCAAGCTCATGCACAAGCACGGCGTGACCTCAGCG
ACAGACGTCACGGGCTTTGGCATCCTCGGGCACGCCCAAAACATGGCAACCTCGCAAAAG
GCCGACGTGGATTTTGAGCTGCACACGCTGCCGGTCATCAAGGACATGCTCGCGGTGAAC
GAGGCGTTCAACGGCCAATGGCGACTTGAGCTCGGCTTCTCGTCCGAGACGTCGGGCGGT
CTCCTTGTCTCGATCGACGCCGACCGCGCT
//
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	match	20202	21266	216.48	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20202	20309	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20310	20352	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20353	20599	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20600	20650	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20651	20717	0.00	+	2	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20718	20771	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20772	20931	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20932	20981	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20982	21037	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	21038	21094	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	21095	21266	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
//
