
genewise output
Score 364.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000032_1.0    6 SFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDE 
                     +F+P S  L++ F LT F+ LKG GCK+PQ  L   L+++  N       
                     AFDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPND----- 
gi|199611001|gb12368 gtgcctcgcgggtgcaatagcagtgtacccgaccgtcgagacag      
                     ctactctgtaaatttcatgctaggggatcacattgataattcaa      
                     gttctgtttaattgggtccctactccactacaccctgccgggcc      


SPP00000032_1.0   55 QFLGAVMPRLGIGMDTCVIPLRHG-GLSLVQTTDYIYPIVDDPYMMGRI 
                          V P    GMD+ V+ + HG GL LV TTD+++P V+DPY++G+I 
                     -----VKPNETPGMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQI 
gi|199611001|gb12500      gacagacgagtaggaatcgtgctcgtaagtttctgggctgcgca 
                          tacaaccgtacgttatcagcgtattcccatttcctaacatagat 
                          ggccgaaagcgtacgcgccgtgtcggcttccctgcactccgcac 


SPP00000032_1.0  103 ACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDA 
                     ACANVLSD+YAMGVTE D MLM+LGV   MT+++RD V   +I+GF D  
                     ACANVLSDVYAMGVTEVDTMLMILGVCRDMTEKQRDVVTTEMIRGFNDL 
gi|199611001|gb12632 gtgagctggtgaggagggaacaacggtcgaagaccgggaagaacgtagc 
                     cgcattcatactgtcatactttttgtggatcaaagattccattggtaat 
                     ctcccagccccgccgactggcgcgccttcgcgagcctcgcggctcttcg 


SPP00000032_1.0  152 AEEAGTSVTGGQTVLNPWIVLGGVATTVCQ                    
                     A +A T+VTGGQTV+NPW ++GGVA +V                      
                     ARQAQTNVTGGQTVMNPWPIVGGVAMSVRS                    
gi|199611001|gb12779 gccgcaagaggcagaactcagggggaagca                    
                     cgacacatcggacttacgcttggtctgtgg                    
                     gcgggaccgccgaggtggattctttgccac                    


SPP00000032_1.0  182                           NEFIMPDNAVPGDVLVLTKPLGT 
                                                ++I P+NAV GDV++LTKPLGT 
                               P:E[gag]        MQIIRPENAVVGDVIILTKPLGT 
gi|199611001|gb12869 GGTGGGTA  Intron 1   TAGAGacaaccgaggggggaacaaccga 
                      <1-----[12870:12966]-1>  tattgcaacttgattttcactgc 
                                               ggttccgcgtgacgccggattcg 


SPP00000032_1.0  206 QVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGL 
                     QVAV V QW   PE+W ++  VVT  D ++A+Q A  +M RLN  AA + 
                     QVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKM 
gi|199611001|gb13038 cgggagtctaaacgctccgacggaccgggggtcagtgtagccacaggaa 
                     atctattagaaacaagagtaattccaacatctatccactggtataccat 
                     attgtgcaggagcggggtgcgcggcttctgccggggatgtactgcacgg 


SPP00000032_1.0  255 MHT                       FNAHAATDITGFGILGHAQNLAK 
                     MH                          AH+ATD+TGFG+L HA+N AK 
                     MHK                       HGAHSATDVTGFGLLAHARNQAK 
gi|199611001|gb13185 acaGTTGGTG  Intron 2   TAGcggctgaggagtgccgcgcacga 
                     taa<0-----[13194:13284]-0>agcacccatcgtgttcacgaaca 
                     gtg                       ctgctgccgacttttgcaccacg 


SPP00000032_1.0  281 QQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLP 
                      Q  +VSF +H LP++  M  V++  GN F L+ G   ETSGGLL+CLP 
                     SQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAETSGGLLLCLP 
gi|199611001|gb13354 tccgggttgccaccaaaaagagaggagattaccggtgggatggccctcc 
                     cataatctatactcttaattataattgactattagtccaccggtttgtc 
                     tgggccctggcgtgttgcgcggcaccgcgtgcgtctaagagtagattgg 


SPP00000032_1.0  330 REQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 
                      E A  F  E++         AWI+G V  G + A I+  P I+EV+P+ 
                     AENAEAFIKELREL---DEKPAWIVGRVIAGLKDACIVPNPTIVEVSPE 
gi|199611001|gb13501 ggagggtaagccgc   ggacgtaggcgaggtaggtagcacaagggtcg 
                     caacacttaatgat   aaaccgttggttcgtaacgttcaccttatcca 
                     agcaagtcaggtgg   tggtggcgcctttcagcgctggcatccacggg 


//
Making a E in phase 1 intron
>gi|199611001|gb|ABWE01000811.1|:subseq(0,23638).pep
AFDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKPNETPGMDSSVVKI
SHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLMILGVCRDMTE
KQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSVRSEMQIIRPENAVVG
DVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKM
MHKHGAHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLD
GFAAETSGGLLLCLPAENAEAFIKELRELDEKPAWIVGRVIAGLKDACIVPNPTIVEVSP
E
//
>gi|199611001|gb|ABWE01000811.1|:subseq(0,23638).[12368:13638].sp
GCGTTTGATCCCCTTTCGCTTGGTCTTGAAGAAGATTTTGTGCTGACGAATTTCAGCGCC
CTTAAAGGCTGTGGCTGCAAACTCCCTCAAGCCAAACTCCTCGGCTATCTGGACAACGTG
ATGCCGAACGACGTGAAGCCCAACGAGACACCAGGAATGGACTCGAGTGTAGTCAAGATC
TCGCACGGCTCGGGTCTGTATCTCGTGTCGACCACTGATTTCTTCTTCCCTTCGGTCGAA
GACCCTTACGTCCAGGGCCAAATCGCCTGTGCCAACGTCCTATCGGACGTCTACGCCATG
GGCGTCACGGAAGTCGATACGATGCTCATGATCCTGGGCGTCTGTCGTGACATGACCGAG
AAACAGCGCGACGTTGTCACGACCGAGATGATCCGTGGCTTTAATGACCTGGCGCGCCAG
GCGCAGACAAACGTCACGGGCGGCCAGACAGTGATGAATCCGTGGCCAATTGTTGGCGGT
GTTGCTATGAGCGTCCGAAGCGAGATGCAGATTATTCGCCCCGAGAACGCGGTTGTGGGA
GACGTGATCATCCTGACGAAACCTCTTGGCACGCAAGTTGCTGTGAATGTGTTCCAATGG
AAGAAAAAGCCCGAGCAGTGGCAGCGTGTGAACCAGGTCGTGACGCCCCATGATGCCGAT
GTGGCCTTCCAGATGGCGTCGGAATCTATGGGTCGACTCAATCTGAACGCAGCCAAGATG
ATGCATAAGCACGGTGCGCACTCTGCGACCGACGTGACAGGCTTTGGTCTTCTTGCGCAC
GCACGCAACCAAGCCAAGTCTCAGCTGGAGGACGTCTCCTTTGAGCTGCACACGCTTCCG
ATTATTAAGAACATGGTCAAGGTGAACGAAGTCATCGGGAACTCGTTTAAGCTCCTGGAT
GGCTTTGCAGCAGAGACATCGGGTGGACTGCTACTTTGTCTGCCGGCAGAGAACGCAGAA
GCGTTTATCAAAGAGCTGCGTGAGCTGGATGAGAAGCCTGCGTGGATCGTGGGCCGCGTT
ATTGCTGGCTTAAAGGACGCGTGCATTGTGCCGAACCCAACTATCGTCGAAGTCTCGCCG
GAG
//
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	match	12368	13638	375.39	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	cds	12368	12869	0.00	+	0	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	intron	12870	12966	0.00	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	cds	12967	13193	0.00	+	2	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	intron	13194	13284	0.00	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)	GeneWise	cds	13285	13638	0.00	+	0	gi|199611001|gb|ABWE01000811.1|:subseq(0,23638)-genewise-prediction-1
//
