
genewise output
Score 288.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000032_1.0   83 VQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNK 
                     + TTD++YP VDDPY++G+IA  NVLSD+YAMGVTE D MLM+LGVS   
                     ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVD 
gi|300122208|em20000 ataagtttctgggctgcgaaggtagctgatgaggagggaacaatggagg 
                     tcccattacctaacatagatccgattcatactgtcatactttttgtgta 
                     cgagcccctcgttgcggcgctgccgtgcgccgtcgaccggcgtgctccc 


SPP00000032_1.0  132 MTDRERDKVMPLIIQGFK                          AAEEA 
                     M     D V   +I+GF                            A  A 
                     MEPDAMDYVTKELIRGFN          D:D[gac]        QARVA 
gi|300122208|em20147 agcggagtgaagtacgtaGGTTTCCC  Intron 1   TAGACcgcgg 
                     tacactaatcaattggta <1-----[20202:20234]-1>  acgtc 
                     ggcccgccccgggcttcc                          agccg 


SPP00000032_1.0  156 GTSVTGGQTVLNPWIVLGGVATTVCQPNE-FIMPDNAVPGDVLVLTKPL 
                      T+VTGGQTV NPW ++GGVA++ C+  E FI P +  PGDV+VLTKPL 
                     VTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVHGEPGDVIVLTKPL 
gi|300122208|em20252 gaagaggcagcactcaaggggttatcggggtaccgcggcgggagcaacc 
                     tcatcggactgacgcttggtccccggagaattgctagacgattttcact 
                     tgcctcggctccggggcctgtcggcggcaccctacccgtccgcgggggg 


SPP00000032_1.0  204 GTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAA 
                     GTQ+AV + +WL    K+N+++ V++ EDV  +Y+ AM +M+ LN   A 
                     GTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLEGA 
gi|300122208|em20399 gactggaatgtccaggatacgcggcaggggggttaagagtatacacggg 
                     gcatctattagtgcccatagtgcttgtaattccaatctactcctatagc 
                     cgagggcgcgggcggggcccgcaggcggcggggcggggggggggcggcg 


SPP00000032_1.0  253 GLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAA 
                      LM   +AH  TD+TGFG+ GHA NLA +Q   V +V+  LP++  MA  
                     RLMWKHHAHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMAR 
gi|300122208|em20546 ccataccgcgtaggagtggagcgaacgggcgagggcgggaccaaaaaga 
                     gttgaaacaggcatcgtgtcgaccatccaaaactatttactcttaatcg 
                     tggggccgcgcgcgggccggccggcgccggggggcgggcgggccgcgca 


SPP00000032_1.0  302 VSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ 
                     V     N + L+ G   ETSGGL+I +  E A  +   IK  K   GH  
                     VESHLNNNWNLFKGRSAETSGGLMIMMRPEDAEAY---IKEYKEITGHD 
gi|300122208|em20693 ggaccaaatactagctggatggcaaaaccgggggt   aagtagaagcg 
                     tagataaagattaggccaccggtttttgcaacaca   taaaaatcgaa 
                     ggctccccgtccgaccggcgacggcggtggcgggc   cagcggccgtt 


SPP00000032_1.0  351 AWIIGIVEKGNRTARIIDKPRIIEV                         
                     AWIIG V +G R   +++ P +IEV                         
                     AWIIGKVVEGQRKGYVVENPTLIEV                         
gi|300122208|em20831 gtaagaggggccagtgggacacagg                         
                     cgttgattagagagattaaccttat                         
                     ggccggcggtgcggcgggccggcgg                         


//
Making a D in phase 1 intron
>gi|300122208|emb|FN668651.1|:subseq(181756,30905).pep
ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVDMEPDAMDYVTK
ELIRGFNDQARVAVTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVHGEPGDVIVLTK
PLGTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLEGARLMWKHHAH
GCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMARVESHLNNNWNLFKGRSAETS
GGLMIMMRPEDAEAYIKEYKEITGHDAWIIGKVVEGQRKGYVVENPTLIEV
//
>gi|300122208|emb|FN668651.1|:subseq(181756,30905).[20000:20905].sp
ATCTCGACAACGGACTTCTTCTACCCTTCCGTGGATGATCCGTACGTGCAGGGCAAGATC
GCTGCGTGCAACGTGCTTTCGGACATGTACGCCATGGGTGTCACGGAAGTCGACACGATG
CTCATGATTTTGGGCGTTAGCGTCGACATGGAGCCCGACGCCATGGACTACGTCACCAAG
GAGTTGATCCGTGGTTTCAACGACCAAGCGCGCGTCGCGGTTACGAACGTCACTGGCGGG
CAGACCGTTCGCAACCCGTGGCCGATGATCGGCGGTGTGGCTTCCTCGACGTGCCGGGAG
GGCGAAGACTTCATCCGTCCAGTCCACGGCGAGCCTGGCGACGTGATCGTGCTGACGAAG
CCGCTGGGCACGCAATTGGCGGTGAACATGTTCGAGTGGCTGCGCACGGCGGCGAAGTTC
AACCGCGTGCGCGCAGTGCTGAGCGTGGAGGACGTGGTGGCGTCGTACAAGATGGCGATG
GAGTCGATGTCGACGCTGAACCTGGAGGGCGCGCGTCTGATGTGGAAGCACCACGCGCAC
GGGTGCACGGACGTGACGGGGTTCGGCGTGACGGGCCACGCGACGAACCTGGCCGCCGAG
CAGGAGAAGGCGGTGGACCTGGTGGTGGACACGCTGCCGATCATCAAGAACATGGCCAGA
GTGGAGAGCCATCTCAACAACAACTGGAATCTCTTCAAGGGACGCTCCGCGGAGACCTCG
GGAGGCCTGATGATCATGATGCGTCCGGAGGACGCGGAGGCGTACATCAAAGAGTACAAG
GAGATCACCGGGCATGATGCGTGGATCATCGGGAAGGTCGTGGAGGGTCAGCGCAAGGGG
TACGTGGTGGAGAACCCCACGCTGATCGAGGTG
//
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	match	20000	20905	290.63	+	.	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	cds	20000	20201	0.00	+	0	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	intron	20202	20234	0.00	+	.	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	cds	20235	20905	0.00	+	2	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
//
