
genewise output
Score 229.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000047_1.0   24 RRPFDPTAHDLDASFRLTRFADLKGRGCKVPQDVLSKLVSALQQDYSAQ 
                     R PF+PT H L   FRLT F+ LKG GCK+PQ+ L   +S +  D     
                     RAPFNPTDHGLREDFRLTDFSALKGXGCKLPQEKLLSYISGIANDLKPN 
gi|288565291|gb20000 cgctacagcgccggtccagtagcagtgtacccgaccttatgagagcaca 
                     gcctaccaagtgaatgtcatgctaggggatcaaattcatcgtcaataca 
                     tgccccactggcaccgccctcggacaccgacgaaacccctgaccccacc 


SPP00000047_1.0   73 D--QEPQFLNVAIPRIGIGLDCSVIPLRH---GGLCLVQTTDFFYPIVD 
                     +     Q       R+  G+D SV+ ++H   G L ++ TTDFFYP+V  
                     EVCTRIQHWRSHCRRVD!GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQ 
gi|288565291|gb20147 ggtacacctctctccgg4gagtaggaaaccatggctaataagtttccgc 
                     atgcgtaaggcagggta gtacgttataacatgatattcccattactta 
                     gattacgtgcatcccac cgcgcccgcgccgtgcccgtccctccctgca 


SPP00000047_1.0  117 DPYMM                       GKIACANVLSDLYAMGVTDCD 
                     DPY++                       G+IACANVLSDLYAMGVT+ D 
                     DPYVQ                       GRIACANVLSDLYAMGVTEVD 
gi|288565291|gb20295 gctgcGTACTTT  Intron 1   TAGgcagtgagctgctgaggaggg 
                     acata<0-----[20310:20352]-0>ggtcgcattcatactgtcata 
                     tccca                       cctccccgcgtgtggcccacc 


SPP00000047_1.0  143 NMLMLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPW 
                      MLM+L VS  MT+ ERDVV   ++ GF D A EAGT VTGGQ+V+NPW 
                     TMLMILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPW 
gi|288565291|gb20416 aacaacggtcaaagcgcgggaaccacgtagcgcgggaagaggcagaact 
                     ctttttgtcgctcatagattccattagtaatcgacgcatcggacttacg 
                     ggcgccctgcgggccgcccggggcccccccttcatccccgccgccgcgg 


SPP00000047_1.0  192 CTIGGVASTICQ                          NEYIVPDNAVV 
                       +GGVA ++                            +E I P+NA   
                     PIVGGVAMSVRA          P:E[gag]        SEIIRPENATA 
gi|288565291|gb20563 cagggggaagcgGGTAGTCC  Intron 2   TAGAGtgaaccgagag 
                     cttggtctgtgc <1-----[20600:20650]-1>  cattgcaaccc 
                     gtcccccgttcc                          cgctagacgcc 


SPP00000047_1.0  216 GDVLVLTKPL                          TQVAVNAHQWIDQ 
                     G +LVLTKPL                          TQ+AVNA+Q  DQ 
                     GQMLVLTKPL           G:G[ggc]       TQLAVNAYQMKDQ 
gi|288565291|gb20686 gcacgcaaccGGGTGCGCT  Intron 3   TAGCaccggagtcaagc 
                     gattttcact  <2-----[20718:20771]-2> catctacaataaa 
                     aagcgccgcc                          gggcgcgcgggcg 


SPP00000047_1.0  240 PERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARLMHK          
                     P RW++++  ++ E   +A+  A  SM+RLN   A+LMHK          
                     PARWSKVESFLTREMADRAFSVASESMSRLNVNGAKLMHK          
gi|288565291|gb20812 cgcttaggattacgaggcgtaggtgtaaccagaggacaca          
                     ccggcatagttcgatcagctgtccactggtatagcattaa          
                     cgcgcgcatcgggggcccgcccacgggcaccccccgcgcg          


SPP00000047_1.0  280                        YNAHGATDITGFGLLGHA         
                                            +    ATD+TGFG+LGHA         
                                            HGVTSATDVTGFGILGHA         
gi|288565291|gb20932 GTATTAT  Intron 4   TAGcggatgaggagtgacgcg         
                     <0-----[20932:20981]-0>agtccccatcgtgttgac         
                                            ccgcagaccgctcccgcc         


SPP00000047_1.0  298                           TLAAHQKKDVSFVIHNLPVIAKM 
                                                +A  QK DV F +H LPVI  M 
                                Q:Q[caa]       NMATSQKADVDFELHTLPVIKDM 
gi|288565291|gb21036 CAGTACGGC  Intron 5   TAGAaagatcaggggtgccaccgaaga 
                       <2-----[21038:21094]-2> atcccaacatatatactcttaat 
                                               cgacgagccgttggcgggccgcg 


SPP00000047_1.0  322 AAVAKACGNMFQLLQGHSAETSGGLLICLPREQAA               
                      AV +A   +++L  G S+ETSGGLL+ +  ++A                
                     LAVNEAFNGQWRLELGFSSETSGGLLVSIDADRAQ               
gi|288565291|gb21165 cggaggtagctccgcgtttgatggccgtagggcgc               
                     tctaactagaggtatgtccaccggtttctacagca               
                     cggcggcccagatgcccgcgggctctcgccccctg               


SPP00000047_1.0  357                        AYCKDIEKQEGYQAWIIGIVEKGNKT 
                                            A+  D+   +   AWI+G V +G K  
                                            AFIDDLVALDMQPAWIVGRVVQGTKQ 
gi|288565291|gb21270 GTACCGC  Intron 6   TAGgtaggtggcgaccgtaggcggcgaac 
                     <0-----[21270:21313]-0>cttaattctataccgttggttagcaa 
                                            gtcccggcccgggggcccgcgaccga 


SPP00000047_1.0  383 ARIIDKPRVIEV                                      
                     AR+      +E+                                      
                     ARLAPDVTFVEI                                      
gi|288565291|gb21392 gctgcggatgga                                      
                     cgtccatcttat                                      
                     gggggcgctcat                                      


//
Making a E in phase 1 intron
Making a G in phase 2 intron
Making a Q in phase 2 intron
>gi|288565291|gb|GG743906.1|:subseq(122474,31427).pep
RAPFNPTDHGLREDFRLTDFSALKGXGCKLPQEKLLSYISGIANDLKPNEVCTRIQHWRS
HCRRVDXGMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYVQGRIACANVLSDLYAMGV
TEVDTMLMILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNVTGGQTVMNPWPIVGGVA
MSVRAESEIIRPENATAGQMLVLTKPLGTQLAVNAYQMKDQPARWSKVESFLTREMADRA
FSVASESMSRLNVNGAKLMHKHGVTSATDVTGFGILGHAQNMATSQKADVDFELHTLPVI
KDMLAVNEAFNGQWRLELGFSSETSGGLLVSIDADRAQAFIDDLVALDMQPAWIVGRVVQ
GTKQARLAPDVTFVEI
//
>gi|288565291|gb|GG743906.1|:subseq(122474,31427).[20000:20197].sp
CGTGCGCCCTTCAACCCCACAGACCATGGGCTGCGCGAAGACTTCCGGCTCACCGACTTT
AGCGCGCTGAAAGGCTGAGGCTGCAAGCTACCCCAGGAAAAACTACTCTCCTACATCTCT
GGGATAGCCAACGACCTCAAACCCAACGAGGTATGTACTCGAATCCAGCATTGGCGCTCA
CATTGCCGCCGCGTAGAC
>gi|288565291|gb|GG743906.1|:subseq(122474,31427).[20202:21427].sp
GGCATGGACTCGAGCGTCGTCAAGATCAAGCACCCCAAGTTTGGGGACCTCTACATGATT
TCCACCACCGATTTCTTCTACCCTCTGGTCCAAGATCCCTACGTCCAAGGCCGCATTGCC
TGCGCCAACGTGCTCTCGGATCTGTATGCGATGGGCGTCACCGAAGTCGACACGATGCTC
ATGATCCTCGGCGTTTCGCGCACGATGACGGACCTCGAGCGCGACGTCGTGACGACGCAG
CTCATCCACGGCTTCAACGACCTTGCTCGCGAAGCTGGCACCAACGTCACGGGCGGCCAG
ACCGTCATGAACCCGTGGCCGATTGTCGGCGGCGTCGCCATGAGTGTTCGCGCCGAGTCC
GAGATCATTCGACCGGAAAACGCGACCGCCGGACAAATGCTCGTGCTCACCAAGCCCCTC
GGCACGCAGCTGGCCGTGAACGCGTACCAGATGAAGGACCAGCCCGCGCGCTGGTCCAAG
GTCGAAAGTTTCTTGACGCGGGAGATGGCCGACCGCGCGTTCAGCGTCGCATCCGAGTCG
ATGAGCCGACTCAACGTCAACGGCGCCAAGCTCATGCACAAGCACGGCGTGACCTCAGCG
ACAGACGTCACGGGCTTTGGCATCCTCGGGCACGCCCAAAACATGGCAACCTCGCAAAAG
GCCGACGTGGATTTTGAGCTGCACACGCTGCCGGTCATCAAGGACATGCTCGCGGTGAAC
GAGGCGTTCAACGGCCAATGGCGACTTGAGCTCGGCTTCTCGTCCGAGACGTCGGGCGGT
CTCCTTGTCTCGATCGACGCCGACCGCGCTCAGGCGTTTATCGACGACTTGGTGGCCCTC
GACATGCAGCCGGCGTGGATCGTCGGCCGGGTCGTGCAAGGCACCAAGCAAGCGCGGTTG
GCGCCGGACGTGACCTTTGTCGAAATT
//
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	match	20000	20197	8.58	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20000	20197	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-1
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	match	20202	21427	224.04	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20202	20309	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20310	20352	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20353	20599	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20600	20650	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20651	20717	0.00	+	2	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20718	20771	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20772	20931	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	20932	20981	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	20982	21037	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	21038	21094	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	21095	21269	0.00	+	1	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	intron	21270	21313	0.00	+	.	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
gi|288565291|gb|GG743906.1|:subseq(122474,31427)	GeneWise	cds	21314	21427	0.00	+	0	gi|288565291|gb|GG743906.1|:subseq(122474,31427)-genewise-prediction-2
//
