
genewise output
Score 405.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000047_1.0   27 FDPTAHDLDASFRLTRFADLKGRGCKVPQDVLSKLVSALQQDYSAQDQE 
                     FDP    LD SF LT F+ LKG GCK+PQ    KL+  L+    A D + 
                     FDPVDLGLDPSFTLTDFSALKGCGCKLPQ---AKLLGYLED--IANDLK 
gi|299737255|gb20000 tgcggcgcgcttacagtagcagtgtatcc   gatcgtcgg  agagta 
                     tactatgtacctctcatgctaggggatca   cattgataa  tcaata 
                     cccgtttttggcaggtccgggccacaggg   gagcacgat  ccccgg 


SPP00000047_1.0   76 PQFLNVAIPRIGIGLDCSVIPLRHG-GLCLVQTTDFFYPIVDDPYMMGK 
                     P       P    G+D SV+ + HG  L ++ TTDFF+P V+DPY++GK 
                     PN----ETP----GMDSSVVKISHGKDLYMISTTDFFFPSVEDPYVQGK 
gi|299737255|gb20132 ca    gac    gagtaggaaacgagttaataagtttctgggctgcga 
                     ca    acc    gtacgttatgagaatattcccatttcctaacataga 
                     at    ggt    cgcgccggctccgtgcgcgggtcccgcgacgctgcg 


SPP00000047_1.0  124 IACANVLSDLYAMGVTDCDNMLMLLAVSTKMTEKERDVVIPLIMRGFKD 
                     IACANVLSD+YAMGVT+ D MLM+L V   M+EKERDVV   ++RGF D 
                     IACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKERDVVTTQMIRGFND 
gi|299737255|gb20255 agtgagctggtgaggagggaacaacggtcgaagagcgggaacaacgtag 
                     tcgcattcatactgtcatactttttgtggatgaaagattccattggtaa 
                     cgcgcgcgcgcggcggggcggcgcccgtgcgcgggctcgggggccgtct 


SPP00000047_1.0  173 SALEAGTTVTGGQSVVNPWCTIGGVASTICQ                   
                      A +A T VTGGQ+V+NPW  +GGVA ++                     
                     LARKAETNVTGGQTVMNPWPIVGGVAMSVRS                   
gi|299737255|gb20402 cgcaggaagaggcagaactcagggggaagca                   
                     tcgacacatcggacttacgcttggtctgtgg                   
                     tgcggggcggtgggcgcaggttacccgcgcc                   


SPP00000047_1.0  204                           NEYIVPDNAVVGDVLVLTKPLGT 
                                               +E I P NA VGDV++LTK LGT 
                               P:E[gaa]        SEIIRPVNAQVGDVIILTKALGT 
gi|299737255|gb20495 GGTACGTC  Intron 1   TAGAAagaaccgagcggggaacaagtga 
                      <1-----[20496:20592]-1>  gattgctacatgattttcactgc 
                                               cgctccgcgggccgccccgggcg 


SPP00000047_1.0  228 QVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARL 
                     QVAVN  QW  +PERW R+  VV+ +D    +  A  SM+RLN  AARL 
                     QVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAARL 
gi|299737255|gb20664 cgggactctcaccgctccgggggagcgggcgtgagtgtaaccacaggcc 
                     atctattaggagcaggagtcattctaacaagtctccactggtataccgt 
                     accgcgcagcgctgcgacgacggccgccgcgcgggcgcgtgccgccagc 


SPP00000047_1.0  277 MHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVA 
                     MHKY AH ATD+TGFG+L HA+  A  Q +DV+F IH LP+I  M  V  
                     MHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKVN 
gi|299737255|gb20811 acatggctgaggagtgacgcgcacgatcacggatgacaccaaccagaga 
                     taaagcacccatcgtgttcacgaacacacgatatatactcttaattata 
                     gcgccgcagcccgcctcggcgtcgcaggcccgctgccgggccgcgcggc 


SPP00000047_1.0  326 KACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIG 
                     +  GN F+LL+G +AETSGGLL+CLP E A AY  ++   +G  AW++G 
                     ETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVG 
gi|299737255|gb20958 gaagattcccggtgggatggccttccggcgggtaggccgtggacgtggg 
                     actgactgttagtccaccggtttgtccaacacatcatgctagaccgttg 
                     ggcccgctgcgtcgcgggcggggcgcggtgcgccgggtagccgcggccc 


SPP00000047_1.0  375 IVEKGNKTARIIDKPRVIEVPAKD                          
                      V  G+K ARI+  P ++EV  +D                          
                     RVVAGSKDARIVANPTILEVTLED                          
gi|299737255|gb21105 cggggaaggcaggacaacggacgg                          
                     gttcggaacgttcaccttatctaa                          
                     ccccccgccccgccggccacgcgc                          


//
Making a E in phase 1 intron
>gi|299737255|gb|GL376634.1|:subseq(770916,31176).pep
FDPVDLGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIANDLKPNETPGMDSSVVKISH
GKDLYMISTTDFFFPSVEDPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKE
RDVVTTQMIRGFNDLARKAETNVTGGQTVMNPWPIVGGVAMSVRSESEIIRPVNAQVGDV
IILTKALGTQVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAARLMH
KYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKVNETIGNSFRLLEGF
AAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVGRVVAGSKDARIVANPTILEVTLED
//
>gi|299737255|gb|GL376634.1|:subseq(770916,31176).[20000:21176].sp
TTCGACCCCGTGGATCTTGGTCTTGATCCGTCGTTCACACTGACGGATTTCAGCGCGCTG
AAGGGCTGCGGATGCAAATTGCCGCAGGCGAAATTGCTCGGATACCTGGAAGATATCGCC
AACGACTTGAAGCCAAATGAGACGCCTGGCATGGACTCGAGCGTCGTGAAGATCAGTCAC
GGCAAGGATTTGTACATGATCTCGACGACGGATTTCTTCTTCCCGTCCGTGGAAGACCCG
TACGTTCAGGGCAAGATCGCGTGCGCGAACGTGCTCTCGGACGTGTACGCGATGGGCGTG
ACGGAGGTGGACACGATGCTCATGATCCTCGGCGTGTGTCGGGACATGAGCGAGAAGGAG
CGCGATGTCGTGACGACGCAGATGATCCGCGGGTTTAACGATCTTGCGCGCAAGGCGGAG
ACGAACGTGACGGGTGGGCAGACGGTCATGAACCCATGGCCGATTGTTGGAGGCGTCGCC
ATGAGCGTGCGCAGCGAAAGCGAGATCATTCGCCCCGTGAACGCGCAGGTGGGCGACGTG
ATCATCCTCACCAAGGCGTTGGGCACGCAAGTCGCCGTGAACCTGTTCCAATGGCGCAAG
CGCCCTGAGCGCTGGCAACGCGTGGCAGACGTGGTGACCGTCCAGGACGCCGAGCACGGG
TTCGCGATGGCGTCCGAGTCCATGAGTCGGCTCAACCTGAACGCCGCACGGCTCATGCAC
AAGTACGGCGCGCACTCAGCGACCGACGTCACGGGCTTCGGTATCCTGGCGCACGCGCGT
AACCAGGCCAAATCGCAGACCCGCGACGTGAACTTTGAGATCCACACGCTGCCGATCATC
CAGCACATGGTCAAGGTGAACGAGACGATCGGCAACTCGTTCCGTCTGCTCGAGGGTTTC
GCGGCCGAGACGTCGGGCGGGCTGCTGTTGTGCCTGCCCGCGGAGCATGCGGACGCGTAC
ATCGCGGAGCTGCGTGCATTGGACGGCAAGCCCGCGTGGGTCGTCGGCCGCGTCGTCGCC
GGCAGCAAGGACGCCCGCATCGTGGCCAACCCGACGATCCTCGAAGTCACGCTCGAGGAC
//
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	match	20000	21176	414.73	+	.	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	cds	20000	20495	0.00	+	0	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	intron	20496	20592	0.00	+	.	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	cds	20593	21176	0.00	+	2	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
//
