
genewise output
Score 312.12 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000047_1.0  105 VQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAVSTK 
                     + TTDFFYP VDDPY++GKIA  NVLSD+YAMGVT+ D MLM+L VS   
                     ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVD 
gi|300122208|em20000 ataagtttctgggctgcgaaggtagctgatgaggagggaacaatggagg 
                     tcccattacctaacatagatccgattcatactgtcatactttttgtgta 
                     cgagcccctcgttgcggcgctgccgtgcgccgtcgaccggcgtgctccc 


SPP00000047_1.0  154 MTEKERDVVIPLIMRGFK                          SALEA 
                     M     D V   ++RGF                            A  A 
                     MEPDAMDYVTKELIRGFN          D:D[gac]        QARVA 
gi|300122208|em20147 agcggagtgaagtacgtaGGTTTCCC  Intron 1   TAGACcgcgg 
                     tacactaatcaattggta <1-----[20202:20234]-1>  acgtc 
                     ggcccgccccgggcttcc                          agccg 


SPP00000047_1.0  178 GTTVTGGQSVVNPWCTIGGVASTICQPNE-YIVPDNAVVGDVLVLTKPL 
                      T VTGGQ+V NPW  IGGVAS+ C+  E +I P +   GDV+VLTKPL 
                     VTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVHGEPGDVIVLTKPL 
gi|300122208|em20252 gaagaggcagcactcaaggggttatcggggtaccgcggcgggagcaacc 
                     tcatcggactgacgcttggtccccggagaattgctagacgattttcact 
                     tgcctcggctccggggcctgtcggcggcaccctacccgtccgcgggggg 


SPP00000047_1.0  226 GTQVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAA 
                     GTQ+AVN  +W+    ++NR++ V+S EDV  +Y  AM SM+ LN   A 
                     GTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLEGA 
gi|300122208|em20399 gactggaatgtccaggatacgcggcaggggggttaagagtatacacggg 
                     gcatctattagtgcccatagtgcttgtaattccaatctactcctatagc 
                     cgagggcgcgggcggggcccgcaggcggcggggcggggggggggcggcg 


SPP00000047_1.0  275 RLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAA 
                     RLM K++AHG TD+TGFG+ GHA  LAA Q+K V +V+  LP+I  MA  
                     RLMWKHHAHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMAR 
gi|300122208|em20546 ccataccgcgtaggagtggagcgaacgggcgagggcgggaccaaaaaga 
                     gttgaaacaggcatcgtgtcgaccatccaaaactatttactcttaatcg 
                     tggggccgcgcgcgggccggccggcgccggggggcgggcgggccgcgca 


SPP00000047_1.0  324 VAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWI 
                     V     N + L +G SAETSGGL+I +  E A AY K+ ++  G+ AWI 
                     VESHLNNNWNLFKGRSAETSGGLMIMMRPEDAEAYIKEYKEITGHDAWI 
gi|300122208|em20693 ggaccaaatactagctggatggcaaaaccgggggtaagtagaagcggta 
                     tagataaagattaggccaccggtttttgcaacacataaaaatcgaacgt 
                     ggctccccgtccgaccggcgacggcggtggcgggccagcggccgttggc 


SPP00000047_1.0  373 IGIVEKGNKTARIIDKPRVIEV                            
                     IG V +G +   +++ P +IEV                            
                     IGKVVEGQRKGYVVENPTLIEV                            
gi|300122208|em20840 agaggggccagtgggacacagg                            
                     tgattagagagattaaccttat                            
                     cggcggtgcggcgggccggcgg                            


//
Making a D in phase 1 intron
>gi|300122208|emb|FN668651.1|:subseq(181756,30905).pep
ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVDMEPDAMDYVTK
ELIRGFNDQARVAVTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVHGEPGDVIVLTK
PLGTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLEGARLMWKHHAH
GCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMARVESHLNNNWNLFKGRSAETS
GGLMIMMRPEDAEAYIKEYKEITGHDAWIIGKVVEGQRKGYVVENPTLIEV
//
>gi|300122208|emb|FN668651.1|:subseq(181756,30905).[20000:20905].sp
ATCTCGACAACGGACTTCTTCTACCCTTCCGTGGATGATCCGTACGTGCAGGGCAAGATC
GCTGCGTGCAACGTGCTTTCGGACATGTACGCCATGGGTGTCACGGAAGTCGACACGATG
CTCATGATTTTGGGCGTTAGCGTCGACATGGAGCCCGACGCCATGGACTACGTCACCAAG
GAGTTGATCCGTGGTTTCAACGACCAAGCGCGCGTCGCGGTTACGAACGTCACTGGCGGG
CAGACCGTTCGCAACCCGTGGCCGATGATCGGCGGTGTGGCTTCCTCGACGTGCCGGGAG
GGCGAAGACTTCATCCGTCCAGTCCACGGCGAGCCTGGCGACGTGATCGTGCTGACGAAG
CCGCTGGGCACGCAATTGGCGGTGAACATGTTCGAGTGGCTGCGCACGGCGGCGAAGTTC
AACCGCGTGCGCGCAGTGCTGAGCGTGGAGGACGTGGTGGCGTCGTACAAGATGGCGATG
GAGTCGATGTCGACGCTGAACCTGGAGGGCGCGCGTCTGATGTGGAAGCACCACGCGCAC
GGGTGCACGGACGTGACGGGGTTCGGCGTGACGGGCCACGCGACGAACCTGGCCGCCGAG
CAGGAGAAGGCGGTGGACCTGGTGGTGGACACGCTGCCGATCATCAAGAACATGGCCAGA
GTGGAGAGCCATCTCAACAACAACTGGAATCTCTTCAAGGGACGCTCCGCGGAGACCTCG
GGAGGCCTGATGATCATGATGCGTCCGGAGGACGCGGAGGCGTACATCAAAGAGTACAAG
GAGATCACCGGGCATGATGCGTGGATCATCGGGAAGGTCGTGGAGGGTCAGCGCAAGGGG
TACGTGGTGGAGAACCCCACGCTGATCGAGGTG
//
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	match	20000	20905	312.12	+	.	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	cds	20000	20201	0.00	+	0	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	intron	20202	20234	0.00	+	.	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
gi|300122208|emb|FN668651.1|:subseq(181756,30905)	GeneWise	cds	20235	20905	0.00	+	2	gi|300122208|emb|FN668651.1|:subseq(181756,30905)-genewise-prediction-1
//
