
genewise output
Score 406.27 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000055_1.0   26 FDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQ 
                     FDP    LD SF LT F+ LKG  CK+P+    KL+      Y++D    
                     FDPVDLGLDPSFTLTDFSALKGCGCKLPQA---KLLG-----YLEDIAN 
gi|299737255|gb20000 tgcggcgcgcttacagtagcagtgtatccg   atcg     tcggaga 
                     tactatgtacctctcatgctaggggatcac   attg     ataatca 
                     cccgtttttggcaggtccgggccacagggg   agca     cgatccc 


SPP00000055_1.0   75 PFMPMSSPRIGIGLDCSVIPLRHG-GLCMVQTTDFFYPIVDDPYMMGKI 
                      + P  +P    G+D SV+ + HG  L M+ TTDFF+P V+DPY++GKI 
                     DLKPNETP----GMDSSVVKISHGKDLYMISTTDFFFPSVEDPYVQGKI 
gi|299737255|gb20123 gtacagac    gagtaggaaacgagttaataagtttctgggctgcgaa 
                     atacaacc    gtacgttatgagaatattcccatttcctaacatagat 
                     cggatggt    cgcgccggctccgtgcgcgggtcccgcgacgctgcgc 


SPP00000055_1.0  123 ACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRGFKDS 
                     ACANVLSD+YAMGVTEVD MLM+L V   M EKERDVV   ++RGF D  
                     ACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKERDVVTTQMIRGFNDL 
gi|299737255|gb20258 gtgagctggtgaggagggaacaacggtcgaagagcgggaacaacgtagc 
                     cgcattcatactgtcatactttttgtggatgaaagattccattggtaat 
                     gcgcgcgcgcggcggggcggcgcccgtgcgcgggctcgggggccgtctt 


SPP00000055_1.0  172 ALEAGTSVTGGHSVVNPWCTIGGVATTICQ                    
                     A +A T+VTGG +V+NPW  +GGVA ++                      
                     ARKAETNVTGGQTVMNPWPIVGGVAMSVRS                    
gi|299737255|gb20405 gcaggaagaggcagaactcagggggaagca                    
                     cgacacatcggacttacgcttggtctgtgg                    
                     gcggggcggtgggcgcaggttacccgcgcc                    


SPP00000055_1.0  202                           NEFIVPDNAVVGDVLVLTKALGT 
                                               +E+I P NA VGDV++LTKALGT 
                               Q:E[gaa]        SEIIRPVNAQVGDVIILTKALGT 
gi|299737255|gb20495 GGTACGTC  Intron 1   TAGAAagaaccgagcggggaacaagtga 
                      <1-----[20496:20592]-1>  gattgctacatgattttcactgc 
                                               cgctccgcgggccgccccgggcg 


SPP00000055_1.0  226 QVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARL 
                     QVAVN  QW  + ERW R+  VV+ +D    +  A +SMSRLN  AARL 
                     QVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAARL 
gi|299737255|gb20664 cgggactctcaccgctccgggggagcgggcgtgagtgtaaccacaggcc 
                     atctattaggagcaggagtcattctaacaagtctccactggtataccgt 
                     accgcgcagcgctgcgacgacggccgccgcgcgggcgcgtgccgccagc 


SPP00000055_1.0  275 MHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAKMAAVA 
                     MHKY AH ATDVTGFG+L HA+  A  Q  +V+F IH LP+I  M  V  
                     MHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKVN 
gi|299737255|gb20811 acatggctgaggagtgacgcgcacgatcacggatgacaccaaccagaga 
                     taaagcacccatcgtgttcacgaacacacgatatatactcttaattata 
                     gcgccgcagcccgcctcggcgtcgcaggcccgctgccgggccgcgcggc 


SPP00000055_1.0  324 KACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGCQAWIIG 
                     +  GN F+LL+G +AETSGGLL+CLP E A AY  ++   +G  AW++G 
                     ETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVG 
gi|299737255|gb20958 gaagattcccggtgggatggccttccggcgggtaggccgtggacgtggg 
                     actgactgttagtccaccggtttgtccaacacatcatgctagaccgttg 
                     ggcccgctgcgtcgcgggcggggcgcggtgcgccgggtagccgcggccc 


SPP00000055_1.0  373 IVEKGSRTARIIDKPRVIEVPAKD                          
                      V  GS+ ARI+  P ++EV  +D                          
                     RVVAGSKDARIVANPTILEVTLED                          
gi|299737255|gb21105 cggggaaggcaggacaacggacgg                          
                     gttcggaacgttcaccttatctaa                          
                     ccccccgccccgccggccacgcgc                          


//
Making a E in phase 1 intron
>gi|299737255|gb|GL376634.1|:subseq(770916,31176).pep
FDPVDLGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIANDLKPNETPGMDSSVVKISH
GKDLYMISTTDFFFPSVEDPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRDMSEKE
RDVVTTQMIRGFNDLARKAETNVTGGQTVMNPWPIVGGVAMSVRSESEIIRPVNAQVGDV
IILTKALGTQVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASESMSRLNLNAARLMH
KYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKVNETIGNSFRLLEGF
AAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVGRVVAGSKDARIVANPTILEVTLED
//
>gi|299737255|gb|GL376634.1|:subseq(770916,31176).[20000:21176].sp
TTCGACCCCGTGGATCTTGGTCTTGATCCGTCGTTCACACTGACGGATTTCAGCGCGCTG
AAGGGCTGCGGATGCAAATTGCCGCAGGCGAAATTGCTCGGATACCTGGAAGATATCGCC
AACGACTTGAAGCCAAATGAGACGCCTGGCATGGACTCGAGCGTCGTGAAGATCAGTCAC
GGCAAGGATTTGTACATGATCTCGACGACGGATTTCTTCTTCCCGTCCGTGGAAGACCCG
TACGTTCAGGGCAAGATCGCGTGCGCGAACGTGCTCTCGGACGTGTACGCGATGGGCGTG
ACGGAGGTGGACACGATGCTCATGATCCTCGGCGTGTGTCGGGACATGAGCGAGAAGGAG
CGCGATGTCGTGACGACGCAGATGATCCGCGGGTTTAACGATCTTGCGCGCAAGGCGGAG
ACGAACGTGACGGGTGGGCAGACGGTCATGAACCCATGGCCGATTGTTGGAGGCGTCGCC
ATGAGCGTGCGCAGCGAAAGCGAGATCATTCGCCCCGTGAACGCGCAGGTGGGCGACGTG
ATCATCCTCACCAAGGCGTTGGGCACGCAAGTCGCCGTGAACCTGTTCCAATGGCGCAAG
CGCCCTGAGCGCTGGCAACGCGTGGCAGACGTGGTGACCGTCCAGGACGCCGAGCACGGG
TTCGCGATGGCGTCCGAGTCCATGAGTCGGCTCAACCTGAACGCCGCACGGCTCATGCAC
AAGTACGGCGCGCACTCAGCGACCGACGTCACGGGCTTCGGTATCCTGGCGCACGCGCGT
AACCAGGCCAAATCGCAGACCCGCGACGTGAACTTTGAGATCCACACGCTGCCGATCATC
CAGCACATGGTCAAGGTGAACGAGACGATCGGCAACTCGTTCCGTCTGCTCGAGGGTTTC
GCGGCCGAGACGTCGGGCGGGCTGCTGTTGTGCCTGCCCGCGGAGCATGCGGACGCGTAC
ATCGCGGAGCTGCGTGCATTGGACGGCAAGCCCGCGTGGGTCGTCGGCCGCGTCGTCGCC
GGCAGCAAGGACGCCCGCATCGTGGCCAACCCGACGATCCTCGAAGTCACGCTCGAGGAC
//
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	match	20000	21176	415.26	+	.	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	cds	20000	20495	0.00	+	0	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	intron	20496	20592	0.00	+	.	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
gi|299737255|gb|GL376634.1|:subseq(770916,31176)	GeneWise	cds	20593	21176	0.00	+	2	gi|299737255|gb|GL376634.1|:subseq(770916,31176)-genewise-prediction-1
//
