
genewise output
Score 357.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000055_1.0   26 FDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQ 
                     FDP +  L+  F LT F+ LKG  CK+P+    KL+  L      D    
                     FDPLSLGLEEDFVLTNFSALKGCGCKLPQA---KLLGYLDNVMPND--- 
gi|199611001|gb12371 tgcctcgcgggtgcaatagcagtgtacccg   accgtcgagacag    
                     tactctgtaaatttcatgctaggggatcac   attgataattcaa    
                     ttctgtttaattgggtccctactccactac   accctgccgggcc    


SPP00000055_1.0   75 PFMPMSSPRIGIGLDCSVIPLRHG-GLCMVQTTDFFYPIVDDPYMMGKI 
                        P  +P    G+D SV+ + HG GL +V TTDFF+P V+DPY++G+I 
                     -VKPNETP----GMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQI 
gi|199611001|gb12500  gacagac    gagtaggaatcgtgctcgtaagtttctgggctgcgca 
                      tacaacc    gtacgttatcagcgtattcccatttcctaacatagat 
                      ggccgaa    agcgtacgcgccgtgtcggcttccctgcactccgcac 


SPP00000055_1.0  123 ACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRGFKDS 
                     ACANVLSD+YAMGVTEVD MLM+L V   M EK+RDVV   ++RGF D  
                     ACANVLSDVYAMGVTEVDTMLMILGVCRDMTEKQRDVVTTEMIRGFNDL 
gi|199611001|gb12632 gtgagctggtgaggagggaacaacggtcgaagaccgggaagaacgtagc 
                     cgcattcatactgtcatactttttgtggatcaaagattccattggtaat 
                     ctcccagccccgccgactggcgcgccttcgcgagcctcgcggctcttcg 


SPP00000055_1.0  172 ALEAGTSVTGGHSVVNPWCTIGGVATTICQ                    
                     A +A T+VTGG +V+NPW  +GGVA ++                      
                     ARQAQTNVTGGQTVMNPWPIVGGVAMSVRS                    
gi|199611001|gb12779 gccgcaagaggcagaactcagggggaagca                    
                     cgacacatcggacttacgcttggtctgtgg                    
                     gcgggaccgccgaggtggattctttgccac                    


SPP00000055_1.0  202                           NEFIVPDNAVVGDVLVLTKALGT 
                                                ++I P+NAVVGDV++LTK LGT 
                               Q:E[gag]        MQIIRPENAVVGDVIILTKPLGT 
gi|199611001|gb12869 GGTGGGTA  Intron 1   TAGAGacaaccgaggggggaacaaccga 
                      <1-----[12870:12966]-1>  tattgcaacttgattttcactgc 
                                               ggttccgcgtgacgccggattcg 


SPP00000055_1.0  226 QVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARL 
                     QVAVN  QW  + E+W R+  VV+  D   A+  A +SM RLN  AA++ 
                     QVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKM 
gi|199611001|gb13038 cgggagtctaaacgctccgacggaccgggggtcagtgtagccacaggaa 
                     atctattagaaacaagagtaattccaacatctatccactggtataccat 
                     attgtgcaggagcggggtgcgcggcttctgccggggatgtactgcacgg 


SPP00000055_1.0  275 MHK                       YNAHGATDVTGFGLLGHAQTLAS 
                     MHK                       + AH ATDVTGFGLL HA+  A  
                     MHK                       HGAHSATDVTGFGLLAHARNQAK 
gi|199611001|gb13185 acaGTTGGTG  Intron 2   TAGcggctgaggagtgccgcgcacga 
                     taa<0-----[13194:13284]-0>agcacccatcgtgttcacgaaca 
                     gtg                       ctgctgccgacttttgcaccacg 


SPP00000055_1.0  301 HQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLP 
                      Q  +VSF +H LP+I  M  V +  GN F+LL G +AETSGGLL+CLP 
                     SQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAETSGGLLLCLP 
gi|199611001|gb13354 tccgggttgccaccaaaaagagaggagattaccggtgggatggccctcc 
                     cataatctatactcttaattataattgactattagtccaccggtttgtc 
                     tgggccctggcgtgttgcgcggcaccgcgtgcgtctaagagtagattgg 


SPP00000055_1.0  350 REQAAAYCKDIEKQEGCQAWIIGIVEKGSRTARIIDKPRVIEVPAKD   
                      E A A+ K++ + +   AWI+G V  G + A I+  P ++EV  +D   
                     AENAEAFIKELRELDEKPAWIVGRVIAGLKDACIVPNPTIVEVSPED   
gi|199611001|gb13501 ggagggtaagccgcggacgtaggcgaggtaggtagcacaagggtcgg   
                     caacacttaatgataaaccgttggttcgtaacgttcaccttatccaa   
                     agcaagtcaggtggtggtggcgcctttcagcgctggcatccacgggc   


//
Making a E in phase 1 intron
>gi|199611001|gb|ABWE01000811.1|:subseq(0,23641).pep
FDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKPNETPGMDSSVVKIS
HGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLMILGVCRDMTEK
QRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSVRSEMQIIRPENAVVGD
VIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKMM
HKHGAHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDG
FAAETSGGLLLCLPAENAEAFIKELRELDEKPAWIVGRVIAGLKDACIVPNPTIVEVSPE
D
//
>gi|199611001|gb|ABWE01000811.1|:subseq(0,23641).[12371:13641].sp
TTTGATCCCCTTTCGCTTGGTCTTGAAGAAGATTTTGTGCTGACGAATTTCAGCGCCCTT
AAAGGCTGTGGCTGCAAACTCCCTCAAGCCAAACTCCTCGGCTATCTGGACAACGTGATG
CCGAACGACGTGAAGCCCAACGAGACACCAGGAATGGACTCGAGTGTAGTCAAGATCTCG
CACGGCTCGGGTCTGTATCTCGTGTCGACCACTGATTTCTTCTTCCCTTCGGTCGAAGAC
CCTTACGTCCAGGGCCAAATCGCCTGTGCCAACGTCCTATCGGACGTCTACGCCATGGGC
GTCACGGAAGTCGATACGATGCTCATGATCCTGGGCGTCTGTCGTGACATGACCGAGAAA
CAGCGCGACGTTGTCACGACCGAGATGATCCGTGGCTTTAATGACCTGGCGCGCCAGGCG
CAGACAAACGTCACGGGCGGCCAGACAGTGATGAATCCGTGGCCAATTGTTGGCGGTGTT
GCTATGAGCGTCCGAAGCGAGATGCAGATTATTCGCCCCGAGAACGCGGTTGTGGGAGAC
GTGATCATCCTGACGAAACCTCTTGGCACGCAAGTTGCTGTGAATGTGTTCCAATGGAAG
AAAAAGCCCGAGCAGTGGCAGCGTGTGAACCAGGTCGTGACGCCCCATGATGCCGATGTG
GCCTTCCAGATGGCGTCGGAATCTATGGGTCGACTCAATCTGAACGCAGCCAAGATGATG
CATAAGCACGGTGCGCACTCTGCGACCGACGTGACAGGCTTTGGTCTTCTTGCGCACGCA
CGCAACCAAGCCAAGTCTCAGCTGGAGGACGTCTCCTTTGAGCTGCACACGCTTCCGATT
ATTAAGAACATGGTCAAGGTGAACGAAGTCATCGGGAACTCGTTTAAGCTCCTGGATGGC
TTTGCAGCAGAGACATCGGGTGGACTGCTACTTTGTCTGCCGGCAGAGAACGCAGAAGCG
TTTATCAAAGAGCTGCGTGAGCTGGATGAGAAGCCTGCGTGGATCGTGGGCCGCGTTATT
GCTGGCTTAAAGGACGCGTGCATTGTGCCGAACCCAACTATCGTCGAAGTCTCGCCGGAG
GAC
//
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	match	12371	13641	365.43	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	cds	12371	12869	0.00	+	0	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	intron	12870	12966	0.00	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	cds	12967	13193	0.00	+	2	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	intron	13194	13284	0.00	+	.	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)	GeneWise	cds	13285	13641	0.00	+	0	gi|199611001|gb|ABWE01000811.1|:subseq(0,23641)-genewise-prediction-1
//
