TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   1.6  

>gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.29,
              whole genome shotgun sequence
          Length = 406166

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 4      ISNGQVLDSRNQSPWRVSFL 23
              + NG++L SR++ PW +S++
Sbjct: 152304 VQNGRLLTSRSEEPWSISWM 152245


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,473,124
Number of Sequences: 131
Number of extensions: 6149
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 1
length of query: 94
length of database: 9,560,209
effective HSP length: 69
effective length of query: 25
effective length of database: 9,551,170
effective search space: 238779250
effective search space used: 238779250
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.6 bits)